Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10746426	0.84[EUR][1000 genomes]
rs10863839	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10863840	0.81[EUR][1000 genomes]
rs11119521	0.83[EUR][1000 genomes]
rs11119522	0.83[EUR][1000 genomes]
rs11119523	0.83[EUR][1000 genomes]
rs11582700	0.95[ASN][1000 genomes]
rs12049235	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12411254	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12733171	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12759944	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17188260	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2473623	0.84[ASN][1000 genomes]
rs4348724	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4500315	0.95[ASN][1000 genomes]
rs4545340	0.83[EUR][1000 genomes]
rs4622068	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4844530	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4845035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4845038	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7544655	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210653800-210678800	Weak transcription	HSMM	muscle
3	chr1:210657000-210669600	Weak transcription	Brain Substantia Nigra	brain
4	chr1:210663600-210669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:210663600-210672400	Weak transcription	HSMMtube	muscle
6	chr1:210667600-210672400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:210668000-210674000	Weak transcription	Aorta	Aorta
8	chr1:210669000-210670000	Enhancers	NH-A	brain
9	chr1:210669000-210670200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:210669000-210670200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:210669000-210670400	Enhancers	Osteobl	bone

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