Variant report

Variant	rs10746426
Chromosome Location	chr1:210693516-210693517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10863839	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10863840	0.97[EUR][1000 genomes]
rs11119521	0.99[EUR][1000 genomes]
rs11119522	0.99[EUR][1000 genomes]
rs11119523	0.99[EUR][1000 genomes]
rs12049235	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12408469	0.84[EUR][1000 genomes]
rs12733171	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12759944	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17188260	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4348724	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4545340	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4622068	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4844530	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4845035	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4845038	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7544655	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3426185	chr1:210693360-210693842	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210680600-210731000	Weak transcription	HSMM	muscle
3	chr1:210688400-210699600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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