Variant report

Variant	rs10863839
Chromosome Location	chr1:210689796-210689797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10735507	0.92[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10746426	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10863840	0.97[EUR][1000 genomes]
rs11119521	0.99[EUR][1000 genomes]
rs11119522	0.81[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.99[EUR][1000 genomes]
rs11119523	0.99[EUR][1000 genomes]
rs11582700	0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs12049235	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12408469	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12411254	0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[ASN][1000 genomes]
rs12733171	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12759944	0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17188260	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4348724	0.83[CHD][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4500315	0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs4545340	0.93[ASW][hapmap];0.80[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4622068	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4844530	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4845035	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4845038	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6540601	0.81[ASN][1000 genomes]
rs7544655	0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210680600-210731000	Weak transcription	HSMM	muscle
3	chr1:210685800-210689800	Weak transcription	Pancreas	Pancrea
4	chr1:210688400-210699600	Weak transcription	HSMMtube	muscle
5	chr1:210689400-210690000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:210689400-210691000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:210689600-210690200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:210689600-210690400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:210689600-210690400	Enhancers	Primary hematopoietic stem cells	blood

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