Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10735507	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10746426	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10863839	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10863840	0.96[EUR][1000 genomes]
rs11119521	0.98[EUR][1000 genomes]
rs11119522	0.98[EUR][1000 genomes]
rs11119523	0.98[EUR][1000 genomes]
rs11582700	0.83[ASN][1000 genomes]
rs12408469	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12411254	0.84[ASN][1000 genomes]
rs12733171	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12759944	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17188260	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4348724	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4500315	0.83[ASN][1000 genomes]
rs4545340	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4622068	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4844530	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4845035	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4845038	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6540601	0.80[ASN][1000 genomes]
rs7544655	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210679800-210689400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210680600-210731000	Weak transcription	HSMM	muscle
4	chr1:210683200-210687400	Weak transcription	HSMMtube	muscle
5	chr1:210685600-210689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:210685800-210689800	Weak transcription	Pancreas	Pancrea

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