Variant report

Variant	rs1274937
Chromosome Location	chr14:69194761-69194762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69193054..69195600-chr14:69237307..69239865,2	K562	blood:
2	chr14:69192535..69194951-chr14:69208491..69210248,2	K562	blood:
3	chr14:69193445..69195647-chr14:69250713..69253431,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1275049	1.00[GIH][hapmap];0.92[TSI][hapmap]
rs168966	1.00[EUR][1000 genomes]
rs194771	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs194774	1.00[EUR][1000 genomes]
rs194775	0.87[EUR][1000 genomes]
rs194785	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs450420	1.00[GIH][hapmap];0.92[TSI][hapmap]
rs7151054	0.84[TSI][hapmap];0.85[EUR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
2	chr14:69181000-69195200	Weak transcription	Spleen	Spleen
3	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:69187400-69200000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr14:69187800-69199400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:69189800-69196200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:69190000-69194800	Weak transcription	Fetal Heart	heart
8	chr14:69191000-69194800	Weak transcription	Small Intestine	intestine
9	chr14:69191000-69195200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:69191000-69195200	Weak transcription	Primary B cells from cord blood	blood
11	chr14:69191800-69195200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:69192000-69194800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:69193000-69200800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr14:69193800-69197400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:69194000-69195800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr14:69194200-69195600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr14:69194200-69195800	Enhancers	Liver	Liver
18	chr14:69194200-69196000	Enhancers	Fetal Intestine Large	intestine
19	chr14:69194200-69196600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:69194200-69196800	Enhancers	HUVEC	blood vessel
21	chr14:69194200-69199200	Enhancers	Fetal Muscle Leg	muscle
22	chr14:69194400-69195000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:69194400-69195000	Enhancers	Fetal Stomach	stomach
24	chr14:69194400-69195200	Enhancers	A549	lung
25	chr14:69194400-69195600	Enhancers	Fetal Kidney	kidney
26	chr14:69194400-69195600	Enhancers	Fetal Lung	lung
27	chr14:69194400-69196600	Enhancers	Fetal Intestine Small	intestine
28	chr14:69194400-69196600	Enhancers	Stomach Mucosa	stomach
29	chr14:69194400-69198000	Enhancers	Primary B cells from peripheral blood	blood
30	chr14:69194600-69194800	Enhancers	K562	blood
31	chr14:69194600-69195000	Enhancers	Brain Anterior Caudate	brain
32	chr14:69194600-69195000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:69194600-69195400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:69194600-69195400	Enhancers	Adipose Nuclei	Adipose
35	chr14:69194600-69195400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr14:69194600-69195400	Enhancers	Pancreas	Pancrea
37	chr14:69194600-69195600	Enhancers	Fetal Muscle Trunk	muscle
38	chr14:69194600-69195600	Flanking Active TSS	HepG2	liver
39	chr14:69194600-69195800	Enhancers	Right Atrium	heart
40	chr14:69194600-69197000	Enhancers	Lung	lung
41	chr14:69194600-69198400	Enhancers	Placenta	Placenta
42	chr14:69194600-69198400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links