Variant report

Variant	rs12755490
Chromosome Location	chr1:214437315-214437316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11120286	0.84[ASN][1000 genomes]
rs12031337	0.84[ASN][1000 genomes]
rs12039689	0.84[ASN][1000 genomes]
rs12406647	1.00[ASW][hapmap];0.86[MKK][hapmap]
rs12407415	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724396	0.83[ASN][1000 genomes]
rs12754081	0.84[ASN][1000 genomes]
rs2067945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119336	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34103218	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34161369	0.84[ASN][1000 genomes]
rs34244779	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960781	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843830	0.84[ASN][1000 genomes]
rs36038181	0.84[ASN][1000 genomes]
rs985853	0.85[CHB][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214435400-214437400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:214435400-214437600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:214435400-214437800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:214435800-214444800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:214436200-214438000	Weak transcription	Fetal Heart	heart
6	chr1:214437000-214437400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:214437000-214437800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:214437200-214437400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:214437200-214437400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:214437200-214438600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:214437200-214438600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:214437200-214439200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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