Variant report

Variant	rs34244779
Chromosome Location	chr1:214434156-214434157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:214433536..214435401-chr1:214453520..214456271,2	K562	blood:
2	chr1:214393546..214395797-chr1:214432514..214434746,2	MCF-7	breast:
3	chr1:214433101..214434885-chr1:214442824..214445144,2	MCF-7	breast:
4	chr1:214431347..214435470-chr1:214452368..214457284,9	MCF-7	breast:
5	chr1:214422523..214426510-chr1:214432301..214435212,4	MCF-7	breast:
6	chr1:214431778..214435128-chr1:214499085..214502575,5	MCF-7	breast:
7	chr1:214389620..214391385-chr1:214433581..214436069,2	MCF-7	breast:
8	chr1:214387550..214390351-chr1:214433953..214436701,3	MCF-7	breast:
9	chr1:214433439..214435482-chr1:214501179..214503791,4	MCF-7	breast:
10	chr1:214433581..214436462-chr1:214445648..214448641,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPN14-2	chr1:214427429-214436307	XLOC_001200

No data

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11120286	0.84[ASN][1000 genomes]
rs12031337	0.84[ASN][1000 genomes]
rs12039689	0.84[ASN][1000 genomes]
rs12407415	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724396	0.83[ASN][1000 genomes]
rs12754081	0.84[ASN][1000 genomes]
rs12755490	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067945	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119336	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34103218	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34161369	0.84[ASN][1000 genomes]
rs34960781	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35843830	0.84[ASN][1000 genomes]
rs36038181	0.84[ASN][1000 genomes]
rs985853	0.84[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214431400-214434200	Weak transcription	Fetal Heart	heart
2	chr1:214432400-214435400	Enhancers	HUVEC	blood vessel
3	chr1:214433000-214434600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:214433000-214434800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:214433200-214434400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:214433200-214434400	Weak transcription	Left Ventricle	heart
7	chr1:214433200-214434600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:214433200-214434800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:214433200-214434800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:214433200-214435000	Weak transcription	NHLF	lung
11	chr1:214433200-214437000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:214433200-214437200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:214433200-214437200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr1:214433400-214434400	Weak transcription	NH-A	brain
15	chr1:214433400-214434400	Weak transcription	NHEK	skin
16	chr1:214433400-214434600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:214433400-214434600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:214433400-214434600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:214433400-214434600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:214433400-214434600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:214433400-214434600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:214433400-214434600	Weak transcription	HMEC	breast
23	chr1:214433400-214434600	Weak transcription	Osteobl	bone
24	chr1:214433400-214434800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:214433400-214434800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:214433400-214434800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:214433400-214434800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:214433400-214434800	Weak transcription	Hela-S3	cervix
29	chr1:214433400-214437000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:214433600-214434800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:214433600-214434800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:214433600-214434800	Weak transcription	A549	lung
33	chr1:214433800-214434600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:214434000-214434600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:214434000-214435000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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