Variant report

Variant	rs36038181
Chromosome Location	chr1:214456254-214456255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214454828..214456756-chr1:214488349..214489973,2	MCF-7	breast:
2	chr1:214454710..214457549-chr7:26301869..26304423,2	MCF-7	breast:
3	chr1:214452237..214456498-chr1:214498464..214506870,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11120286	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12031337	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039689	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407415	0.84[ASN][1000 genomes]
rs12724396	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12754081	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12755490	0.84[ASN][1000 genomes]
rs2067945	0.84[ASN][1000 genomes]
rs2119336	0.86[ASN][1000 genomes]
rs34103218	0.84[ASN][1000 genomes]
rs34161369	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34244779	0.84[ASN][1000 genomes]
rs34960781	0.84[ASN][1000 genomes]
rs35812257	0.83[AMR][1000 genomes]
rs35843830	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985853	0.96[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214453800-214456600	Active TSS	Left Ventricle	heart
2	chr1:214453800-214456600	Active TSS	Right Ventricle	heart
3	chr1:214455000-214456400	Flanking Active TSS	GM12878-XiMat	blood
4	chr1:214455000-214456600	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr1:214455200-214456400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr1:214455200-214456400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:214455200-214456400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr1:214455200-214456800	Enhancers	Spleen	Spleen
9	chr1:214455200-214457000	Flanking Active TSS	Dnd41	blood
10	chr1:214455400-214456400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:214455400-214456400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:214455400-214456400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:214455400-214456400	Enhancers	Esophagus	oesophagus
14	chr1:214455400-214456400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:214455400-214456400	Enhancers	Small Intestine	intestine
16	chr1:214455400-214456400	Flanking Active TSS	NHEK	skin
17	chr1:214455400-214456600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr1:214455400-214456600	Enhancers	Primary B cells from peripheral blood	blood
19	chr1:214455400-214463200	Weak transcription	Lung	lung
20	chr1:214455600-214456400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr1:214455600-214456400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:214455600-214456400	Enhancers	Pancreas	Pancrea
23	chr1:214455600-214456400	Enhancers	Psoas Muscle	Psoas
24	chr1:214455600-214456400	Flanking Active TSS	Hela-S3	cervix
25	chr1:214455600-214456600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:214455600-214456600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr1:214455600-214456600	Enhancers	Fetal Muscle Leg	muscle
28	chr1:214455600-214456600	Enhancers	Thymus	Thymus
29	chr1:214455600-214456600	Flanking Active TSS	HMEC	breast
30	chr1:214455600-214456600	Flanking Active TSS	K562	blood
31	chr1:214455600-214456800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr1:214455600-214456800	Enhancers	Primary T cells fromperipheralblood	blood
33	chr1:214455600-214487800	Weak transcription	Primary B cells from cord blood	blood
34	chr1:214455600-214489000	Weak transcription	Ovary	ovary
35	chr1:214455800-214456400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:214455800-214456400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:214455800-214456400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:214455800-214456400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:214455800-214456400	Enhancers	Fetal Intestine Small	intestine
40	chr1:214455800-214456400	Enhancers	Right Atrium	heart
41	chr1:214455800-214456400	Active TSS	Stomach Smooth Muscle	stomach
42	chr1:214455800-214456600	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr1:214455800-214456600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:214455800-214456600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:214455800-214456600	Enhancers	Liver	Liver
46	chr1:214455800-214456600	Enhancers	Fetal Thymus	thymus
47	chr1:214455800-214456800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr1:214455800-214456800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr1:214455800-214463200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:214456000-214456400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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