Variant report

Variant	rs12826495
Chromosome Location	chr12:21199107-21199108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs1002552	1.00[ASN][1000 genomes]
rs10444413	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10770773	0.81[CEU][hapmap]
rs10770779	0.80[CEU][hapmap]
rs10770780	0.81[CEU][hapmap]
rs10841729	0.81[CEU][hapmap]
rs10841731	0.81[CEU][hapmap]
rs10841761	1.00[ASN][1000 genomes]
rs10841767	1.00[CHB][hapmap]
rs11045598	1.00[ASN][1000 genomes]
rs11045642	1.00[ASN][1000 genomes]
rs11045655	1.00[ASN][1000 genomes]
rs11045657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045658	0.94[CEU][hapmap]
rs11045680	1.00[CEU][hapmap]
rs11045681	1.00[CEU][hapmap]
rs11045690	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11045691	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11045693	0.81[CEU][hapmap]
rs11045694	1.00[CEU][hapmap]
rs11045696	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11045699	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045701	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045704	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045710	0.81[CEU][hapmap]
rs11045711	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045715	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045716	0.81[CEU][hapmap]
rs11045717	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045718	0.81[CEU][hapmap]
rs11045720	0.81[CEU][hapmap]
rs11045727	0.81[CEU][hapmap]
rs11045729	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045736	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045737	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045738	0.80[CEU][hapmap]
rs11045742	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11045771	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045772	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045773	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045780	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045781	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045783	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045785	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045796	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045798	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045799	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045801	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045803	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045805	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045806	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045807	1.00[ASN][1000 genomes]
rs11045813	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045816	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045818	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045819	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045820	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045821	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045824	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045825	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045831	1.00[ASN][1000 genomes]
rs11045832	1.00[ASN][1000 genomes]
rs11045843	1.00[ASN][1000 genomes]
rs11045856	1.00[ASN][1000 genomes]
rs11045858	1.00[ASN][1000 genomes]
rs11045862	1.00[ASN][1000 genomes]
rs11045863	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045870	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045871	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045872	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045873	1.00[ASN][1000 genomes]
rs11045874	1.00[ASN][1000 genomes]
rs11045884	1.00[CHB][hapmap]
rs11045887	1.00[CHB][hapmap]
rs11045891	1.00[CHB][hapmap]
rs11494712	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs11513224	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11513411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11519266	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11522782	1.00[ASN][1000 genomes]
rs12366506	1.00[ASN][1000 genomes]
rs12368356	1.00[ASN][1000 genomes]
rs12371160	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371390	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371570	1.00[ASN][1000 genomes]
rs12371691	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371715	1.00[ASN][1000 genomes]
rs12372124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12372260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12372374	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12811381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12812279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12816524	1.00[ASN][1000 genomes]
rs12819980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12819994	1.00[ASN][1000 genomes]
rs12821068	1.00[ASN][1000 genomes]
rs12821228	1.00[ASN][1000 genomes]
rs12822755	1.00[ASN][1000 genomes]
rs12825129	1.00[ASN][1000 genomes]
rs12826425	1.00[ASN][1000 genomes]
rs12827231	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12828702	1.00[ASN][1000 genomes]
rs12829162	1.00[CHB][hapmap]
rs12829704	1.00[CHB][hapmap]
rs12830545	1.00[ASN][1000 genomes]
rs12832318	1.00[ASN][1000 genomes]
rs1564367	1.00[ASN][1000 genomes]
rs1564369	1.00[ASN][1000 genomes]
rs17328763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17329885	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17680137	1.00[CHB][hapmap]
rs1910166	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910167	1.00[CHB][hapmap]
rs1910169	1.00[CEU][hapmap]
rs1910173	0.81[CEU][hapmap]
rs2169969	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2417872	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2417886	1.00[ASN][1000 genomes]
rs2417888	1.00[ASN][1000 genomes]
rs2417889	1.00[ASN][1000 genomes]
rs34061909	1.00[ASN][1000 genomes]
rs34632551	1.00[ASN][1000 genomes]
rs34691116	1.00[ASN][1000 genomes]
rs34712739	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34816861	1.00[ASN][1000 genomes]
rs34888642	1.00[ASN][1000 genomes]
rs35122607	1.00[ASN][1000 genomes]
rs35157563	1.00[ASN][1000 genomes]
rs35236625	1.00[ASN][1000 genomes]
rs35254320	1.00[ASN][1000 genomes]
rs35406304	1.00[ASN][1000 genomes]
rs35428245	1.00[ASN][1000 genomes]
rs35642680	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35928112	1.00[ASN][1000 genomes]
rs4381410	1.00[ASN][1000 genomes]
rs55708035	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60140950	1.00[ASN][1000 genomes]
rs67620985	1.00[ASN][1000 genomes]
rs67732196	1.00[ASN][1000 genomes]
rs71446755	1.00[ASN][1000 genomes]
rs71446757	1.00[ASN][1000 genomes]
rs71446760	1.00[ASN][1000 genomes]
rs71446761	1.00[ASN][1000 genomes]
rs7306033	1.00[CHB][hapmap]
rs73073222	1.00[ASN][1000 genomes]
rs73073224	1.00[ASN][1000 genomes]
rs7485550	1.00[ASN][1000 genomes]
rs7955066	0.82[CEU][hapmap]
rs7956958	1.00[ASN][1000 genomes]
rs7957158	1.00[ASN][1000 genomes]
rs7957274	1.00[ASN][1000 genomes]
rs7970514	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7973653	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7977197	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3409301	chr12:20986012-21293153	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898872	chr12:21000586-21413632	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1045460	chr12:21007732-21348247	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1048648	chr12:21007732-21410089	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv949142	chr12:21008498-21382619	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv531958	chr12:21008499-21377322	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1039633	chr12:21008519-21332904	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1047113	chr12:21008519-21402544	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv541411	chr12:21008519-21402544	ZNF genes & repeats Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv515735	chr12:21010048-21420712	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv933139	chr12:21011077-21404166	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv557710	chr12:21011480-21404832	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1038517	chr12:21017375-21356781	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv541412	chr12:21017375-21356781	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1052893	chr12:21017376-21356782	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv541413	chr12:21017376-21356782	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1051005	chr12:21017575-21356642	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv541414	chr12:21017575-21356642	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv933316	chr12:21017576-21404166	ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv916519	chr12:21017673-21356568	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	esv3521480	chr12:21075030-21248548	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	esv3521481	chr12:21075030-21248548	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv1043511	chr12:21078795-21295928	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv469159	chr12:21124371-21404832	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv557717	chr12:21124371-21404832	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
30	nsv898878	chr12:21144458-21233745	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	nsv1052587	chr12:21149131-21420712	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
32	nsv1050396	chr12:21152478-21420712	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
33	nsv1035807	chr12:21164694-21199589	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	nsv1054132	chr12:21165101-21402544	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv541415	chr12:21165101-21402544	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	nsv933284	chr12:21171894-21404166	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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