Variant report

Variant	rs12963250
Chromosome Location	chr18:24407846-24407847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr18:24407740-24407890	NHDF-neo	bronchial:	n/a	n/a
2	CTCF	chr18:24407700-24407850	MCF-7	breast:	n/a	n/a
3	CTCF	chr18:24407740-24407890	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000263382	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1058427	1.00[ASN][1000 genomes]
rs11661147	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11661256	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11662880	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11665087	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12968026	1.00[ASN][1000 genomes]
rs12970160	1.00[ASN][1000 genomes]
rs1595254	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16942763	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16942806	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16942835	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958776	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17614110	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1839319	1.00[ASN][1000 genomes]
rs34775621	1.00[ASN][1000 genomes]
rs35531875	1.00[ASN][1000 genomes]
rs548220	1.00[ASN][1000 genomes]
rs55875625	0.89[AFR][1000 genomes]
rs66950491	1.00[ASN][1000 genomes]
rs66985226	1.00[ASN][1000 genomes]
rs67207056	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67384004	1.00[ASN][1000 genomes]
rs67461489	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs68036122	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71353404	1.00[ASN][1000 genomes]
rs72878776	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24404600-24408000	Enhancers	Fetal Stomach	stomach
2	chr18:24404600-24409000	Enhancers	Ovary	ovary
3	chr18:24406400-24408200	Enhancers	Fetal Muscle Leg	muscle

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