The 2.0 version of rSNPBase

Variant report

Variant rs12969300
Chromosome Location chr18:12687925-12687926
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:12658800-12701800 Weak transcription Placenta Amnion Placenta Amnion
2 chr18:12659000-12700200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr18:12660000-12692600 Weak transcription Brain Cingulate Gyrus brain
4 chr18:12660400-12700800 Weak transcription Fetal Brain Male brain
5 chr18:12662800-12701600 Weak transcription Aorta Aorta
6 chr18:12667000-12701600 Weak transcription Gastric stomach
7 chr18:12668400-12694800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr18:12669200-12694200 Weak transcription A549 lung
9 chr18:12669800-12694200 Weak transcription Hela-S3 cervix
10 chr18:12672200-12701400 Weak transcription Colonic Mucosa Colon
11 chr18:12672400-12697200 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr18:12673200-12701600 Weak transcription Psoas Muscle Psoas
13 chr18:12674200-12693800 Weak transcription NHEK skin
14 chr18:12674600-12693800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr18:12674600-12701600 Weak transcription Right Ventricle heart
16 chr18:12674600-12701600 Weak transcription Small Intestine intestine
17 chr18:12674800-12700600 Weak transcription Brain Substantia Nigra brain
18 chr18:12674800-12701400 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr18:12675000-12694000 Weak transcription Stomach Mucosa stomach
20 chr18:12678200-12701400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr18:12678400-12692400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr18:12678400-12692400 Weak transcription Left Ventricle heart
23 chr18:12678400-12693800 Weak transcription HMEC breast
24 chr18:12678400-12694200 Weak transcription Placenta Placenta
25 chr18:12678400-12696800 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr18:12678400-12701200 Weak transcription NH-A brain
27 chr18:12678400-12701600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr18:12678400-12701600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr18:12678400-12701600 Weak transcription HSMMtube muscle
30 chr18:12679600-12693800 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr18:12679600-12693800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr18:12679600-12696600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr18:12679600-12698400 Weak transcription Duodenum Mucosa Duodenum
34 chr18:12679600-12698400 Weak transcription NHLF lung
35 chr18:12679600-12700400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr18:12679600-12700400 Weak transcription Colon Smooth Muscle Colon
37 chr18:12679600-12700600 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr18:12679600-12701000 Weak transcription Primary neutrophils fromperipheralblood blood
39 chr18:12679600-12701000 Weak transcription Rectal Smooth Muscle rectum
40 chr18:12679600-12701200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr18:12679600-12701600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr18:12679800-12692400 Weak transcription Brain Angular Gyrus brain
43 chr18:12679800-12698800 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr18:12679800-12701000 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr18:12679800-12701000 Weak transcription Primary T killer memory cells from peripheral blood blood
46 chr18:12679800-12701000 Weak transcription Muscle Satellite Cultured Cells --
47 chr18:12680000-12688000 Strong transcription Fetal Thymus thymus
48 chr18:12680000-12690000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr18:12680000-12692000 Weak transcription H9 Cell Line embryonic stem cell
50 chr18:12680000-12692600 Weak transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015