Variant report

Variant	rs13006420
Chromosome Location	chr2:173033787-173033788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13006876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014155	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13024942	0.85[AMR][1000 genomes]
rs33910987	0.92[ASN][1000 genomes]
rs34267026	0.85[ASN][1000 genomes]
rs34928801	0.92[ASN][1000 genomes]
rs36078085	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173026400-173037400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:173032000-173034600	Enhancers	Fetal Intestine Large	intestine
3	chr2:173032400-173036800	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:173033000-173034600	Enhancers	Fetal Intestine Small	intestine
5	chr2:173033000-173034800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:173033200-173037000	Weak transcription	Colonic Mucosa	Colon
7	chr2:173033600-173033800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:173033600-173034000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:173033600-173034400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:173033600-173034800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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