Variant report

Variant	rs34267026
Chromosome Location	chr2:173047098-173047099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13005487	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13006420	0.85[ASN][1000 genomes]
rs13006876	0.85[ASN][1000 genomes]
rs17219125	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs33910987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34517309	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34928801	0.93[ASN][1000 genomes]
rs35334306	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35768968	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36078085	0.93[ASN][1000 genomes]
rs56789785	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6751665	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173045200-173047200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr2:173045800-173047400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr2:173046000-173047200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:173046000-173047200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:173046000-173047600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:173046200-173047200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:173046200-173047200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:173046200-173047200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:173046200-173047400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:173046400-173047200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr2:173046400-173047200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:173046400-173047200	Enhancers	NH-A	brain
13	chr2:173046600-173047600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:173046800-173047200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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