Variant report

Variant	rs34928801
Chromosome Location	chr2:173045142-173045143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173044550..173046275-chr2:173093097..173095044,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11893581	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11898023	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13005487	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13006420	0.92[ASN][1000 genomes]
rs13006876	0.92[ASN][1000 genomes]
rs33910987	1.00[ASN][1000 genomes]
rs34238606	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34267026	0.93[ASN][1000 genomes]
rs34517309	0.85[EUR][1000 genomes]
rs35031958	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35768968	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35940741	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36078085	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56789785	0.85[EUR][1000 genomes]
rs67130328	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173038200-173045200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:173042600-173045600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173042800-173045200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:173042800-173046400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:173043000-173046800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:173043200-173046600	Weak transcription	Hela-S3	cervix
7	chr2:173043600-173045400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:173043800-173045400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:173044000-173045200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:173044000-173045200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:173044000-173045600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:173044200-173045200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:173044200-173046200	Weak transcription	Fetal Thymus	thymus
14	chr2:173044200-173046400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:173044200-173046400	Weak transcription	Thymus	Thymus
16	chr2:173044400-173045800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr2:173044400-173046200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:173044400-173046200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr2:173044400-173046400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr2:173044600-173045200	Weak transcription	Spleen	Spleen
21	chr2:173044800-173045200	Bivalent Enhancer	NHEK	skin
22	chr2:173044800-173046000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:173044800-173046000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr2:173045000-173046000	Weak transcription	Primary T cells from cord blood	blood
25	chr2:173045000-173046200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:173045000-173046400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:173045000-173046400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr2:173045000-173046600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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