Variant report

Variant	rs34238606
Chromosome Location	chr2:173044628-173044629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173044550..173046275-chr2:173093097..173095044,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11892244	0.96[AFR][1000 genomes]
rs11893581	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11898023	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12991642	1.00[ASN][1000 genomes]
rs13005487	1.00[ASN][1000 genomes]
rs13014155	1.00[ASN][1000 genomes]
rs13024942	1.00[ASN][1000 genomes]
rs13031965	1.00[ASN][1000 genomes]
rs17219125	1.00[ASN][1000 genomes]
rs34517309	1.00[ASN][1000 genomes]
rs34928801	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35031958	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35123448	1.00[ASN][1000 genomes]
rs35334306	1.00[ASN][1000 genomes]
rs35434134	1.00[ASN][1000 genomes]
rs35768968	1.00[ASN][1000 genomes]
rs35940741	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36027698	1.00[ASN][1000 genomes]
rs36078085	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56789785	1.00[ASN][1000 genomes]
rs57982896	0.98[AFR][1000 genomes]
rs67130328	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6723339	1.00[ASN][1000 genomes]
rs6751665	1.00[ASN][1000 genomes]
rs73976573	0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173038200-173045200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:173042200-173044800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:173042400-173044800	Enhancers	NHEK	skin
4	chr2:173042600-173045000	Enhancers	HMEC	breast
5	chr2:173042600-173045600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:173042800-173045000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:173042800-173045200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:173042800-173046400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:173043000-173046800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:173043200-173046600	Weak transcription	Hela-S3	cervix
11	chr2:173043600-173045000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:173043600-173045400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr2:173043800-173044800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr2:173043800-173045000	Enhancers	Primary T cells from cord blood	blood
15	chr2:173043800-173045000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:173043800-173045400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr2:173044000-173044800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:173044000-173045000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:173044000-173045000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:173044000-173045000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr2:173044000-173045000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr2:173044000-173045200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:173044000-173045200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:173044000-173045600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr2:173044200-173045200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:173044200-173046200	Weak transcription	Fetal Thymus	thymus
27	chr2:173044200-173046400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:173044200-173046400	Weak transcription	Thymus	Thymus
29	chr2:173044400-173045800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr2:173044400-173046200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:173044400-173046200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:173044400-173046400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr2:173044600-173045200	Weak transcription	Spleen	Spleen

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