Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11893581	1.00[ASN][1000 genomes]
rs11898023	1.00[ASN][1000 genomes]
rs12991642	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13005487	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014155	1.00[ASN][1000 genomes]
rs13024942	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13031965	1.00[ASN][1000 genomes]
rs17219125	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs33910987	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34238606	1.00[ASN][1000 genomes]
rs34267026	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34517309	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031958	1.00[ASN][1000 genomes]
rs35123448	1.00[ASN][1000 genomes]
rs35434134	1.00[ASN][1000 genomes]
rs35768968	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940741	1.00[ASN][1000 genomes]
rs36027698	1.00[ASN][1000 genomes]
rs56789785	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67130328	1.00[ASN][1000 genomes]
rs6723339	1.00[ASN][1000 genomes]
rs6751665	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9749973	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173045800-173047400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr2:173046000-173047600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173046200-173047400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:173046600-173047600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:173047200-173047800	Enhancers	HUES48 Cell Line	embryonic stem cell

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