Variant report

Variant	rs13031965
Chromosome Location	chr2:173113461-173113462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173110773..173115157-chr2:173115537..173119654,4	MCF-7	breast:

rs_ID	r²[population]
rs11893581	1.00[ASN][1000 genomes]
rs11898023	1.00[ASN][1000 genomes]
rs12991642	1.00[ASN][1000 genomes]
rs13005487	1.00[ASN][1000 genomes]
rs13014155	1.00[ASN][1000 genomes]
rs13024942	1.00[ASN][1000 genomes]
rs17219125	1.00[ASN][1000 genomes]
rs1920984	1.00[ASW][hapmap]
rs34238606	1.00[ASN][1000 genomes]
rs34517309	1.00[ASN][1000 genomes]
rs35031958	1.00[ASN][1000 genomes]
rs35123448	1.00[ASN][1000 genomes]
rs35334306	1.00[ASN][1000 genomes]
rs35434134	1.00[ASN][1000 genomes]
rs35768968	1.00[ASN][1000 genomes]
rs35940741	1.00[ASN][1000 genomes]
rs36027324	1.00[AFR][1000 genomes]
rs36027698	1.00[ASN][1000 genomes]
rs56789785	1.00[ASN][1000 genomes]
rs67130328	1.00[ASN][1000 genomes]
rs6723339	1.00[ASN][1000 genomes]
rs6751665	1.00[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs13031965	ZAK	cis	parietal	SCAN
rs13031965	LASS6	cis	cerebellum	SCAN

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173105200-173116200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:173105200-173116800	Weak transcription	Right Atrium	heart
3	chr2:173108200-173115800	Weak transcription	Fetal Thymus	thymus
4	chr2:173108400-173113800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:173108600-173118200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:173109400-173119400	Enhancers	HMEC	breast
7	chr2:173110000-173114600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:173110000-173114800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:173110200-173119200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:173110600-173114000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:173110600-173115200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:173110800-173116800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:173110800-173118000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:173110800-173118000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr2:173111000-173115600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:173111200-173115800	Enhancers	HUVEC	blood vessel
17	chr2:173111400-173113600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:173111400-173113800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:173111400-173114200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:173111400-173119800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:173111600-173115000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:173111600-173117600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:173111600-173119200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr2:173111800-173113600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:173111800-173115000	Enhancers	NH-A	brain
26	chr2:173111800-173117200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr2:173112000-173113600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:173112000-173116000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:173112200-173113800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:173112200-173115600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:173112200-173115600	Weak transcription	Brain Anterior Caudate	brain
32	chr2:173112200-173116000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr2:173112400-173119600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:173112800-173114800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:173112800-173115600	Weak transcription	HepG2	liver
36	chr2:173113000-173113600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:173113000-173113600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:173113000-173113600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:173113000-173114200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr2:173113000-173114200	Enhancers	A549	lung
41	chr2:173113000-173119600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr2:173113200-173113800	Enhancers	HSMM	muscle
43	chr2:173113200-173114200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr2:173113200-173115000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:173113200-173115000	Enhancers	Hela-S3	cervix
46	chr2:173113200-173115000	Enhancers	NHLF	lung
47	chr2:173113200-173115000	Enhancers	Osteobl	bone
48	chr2:173113200-173115200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr2:173113200-173115200	Enhancers	HSMMtube	muscle
50	chr2:173113200-173119000	Enhancers	Muscle Satellite Cultured Cells	--

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