Variant report

Variant	rs13024942
Chromosome Location	chr2:173041669-173041670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173041440..173044413-chr2:173328538..173330490,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11893581	1.00[ASN][1000 genomes]
rs11898023	1.00[ASN][1000 genomes]
rs12991642	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13005487	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006420	0.85[AMR][1000 genomes]
rs13006876	0.80[AMR][1000 genomes]
rs13014155	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13031965	1.00[ASN][1000 genomes]
rs17219125	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34238606	1.00[ASN][1000 genomes]
rs34517309	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031958	1.00[ASN][1000 genomes]
rs35123448	1.00[ASN][1000 genomes]
rs35334306	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35434134	1.00[ASN][1000 genomes]
rs35768968	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940741	1.00[ASN][1000 genomes]
rs36027698	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56789785	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67130328	1.00[ASN][1000 genomes]
rs6723339	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751665	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173037800-173043000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:173038000-173042600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173038000-173043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:173038200-173042400	Weak transcription	NH-A	brain
5	chr2:173038200-173042600	Weak transcription	HMEC	breast
6	chr2:173038200-173043400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr2:173038200-173045200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:173038400-173042200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:173038400-173042400	Weak transcription	NHEK	skin
10	chr2:173038400-173042800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:173038400-173043600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:173038400-173043800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:173038400-173044000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:173038400-173044000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:173038600-173043600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:173038600-173044000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:173039000-173044000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:173040600-173042600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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