Variant report

Variant	rs13006876
Chromosome Location	chr2:173034038-173034039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13006420	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014155	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13024942	0.80[AMR][1000 genomes]
rs33910987	0.92[ASN][1000 genomes]
rs34267026	0.85[ASN][1000 genomes]
rs34517309	0.82[AFR][1000 genomes]
rs34928801	0.92[ASN][1000 genomes]
rs36078085	0.92[ASN][1000 genomes]
rs57343643	0.91[AFR][1000 genomes]
rs73014655	0.91[AFR][1000 genomes]
rs73014666	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13006876	CYBRD1	cis	parietal	SCAN
rs13006876	DHRS9	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173026400-173037400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:173032000-173034600	Enhancers	Fetal Intestine Large	intestine
3	chr2:173032400-173036800	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:173033000-173034600	Enhancers	Fetal Intestine Small	intestine
5	chr2:173033000-173034800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:173033200-173037000	Weak transcription	Colonic Mucosa	Colon
7	chr2:173033600-173034400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:173033600-173034800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:173033800-173034800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:173034000-173034400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:173034000-173034400	Enhancers	HSMMtube	muscle
12	chr2:173034000-173034400	Enhancers	Osteobl	bone
13	chr2:173034000-173037400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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