Variant report

Variant	rs13029549
Chromosome Location	chr2:144562877-144562878
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10205158	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12993352	0.93[ASN][1000 genomes]
rs13005318	0.84[ASN][1000 genomes]
rs13006296	0.84[ASN][1000 genomes]
rs13012919	0.92[ASN][1000 genomes]
rs13035128	0.92[ASN][1000 genomes]
rs13035981	0.80[CHB][hapmap]
rs16823166	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16823284	0.80[CHB][hapmap]
rs1882625	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900590	0.80[CHB][hapmap]
rs34113599	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34372952	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34607263	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34924549	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35563346	0.92[ASN][1000 genomes]
rs35864909	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36016304	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36117473	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56354994	0.82[ASN][1000 genomes]
rs6430047	0.80[CHB][hapmap]
rs6714415	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6735072	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6754251	0.80[CHB][hapmap]
rs7564341	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7568511	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7569139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581136	0.89[GIH][hapmap]
rs7607672	0.86[GIH][hapmap]
rs7607751	0.82[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144553800-144564000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:144559400-144564000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:144560000-144563200	Enhancers	Fetal Stomach	stomach
4	chr2:144561400-144565400	Weak transcription	Right Atrium	heart
5	chr2:144561400-144565400	Weak transcription	NHLF	lung
6	chr2:144561800-144564600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:144562000-144565200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:144562400-144564000	Enhancers	Fetal Brain Male	brain
9	chr2:144562800-144563000	Enhancers	Fetal Lung	lung

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