Variant report

Variant	rs6735072
Chromosome Location	chr2:144554785-144554786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr2:144554684-144554884	K562	blood:	n/a	chr2:144554738-144554758 chr2:144554736-144554750 chr2:144554742-144554756 chr2:144554739-144554752 chr2:144554739-144554752 chr2:144554746-144554760 chr2:144554739-144554753 chr2:144554740-144554750 chr2:144554744-144554755 chr2:144554740-144554754

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144535921..144538045-chr2:144553055..144555642,2	K562	blood:
2	chr2:144544979..144546834-chr2:144554013..144556178,2	K562	blood:

Variant related genes	Relation type
ENSG00000236356	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10205158	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12993352	0.92[ASN][1000 genomes]
rs13005318	0.83[ASN][1000 genomes]
rs13006296	0.83[ASN][1000 genomes]
rs13012919	0.91[ASN][1000 genomes]
rs13029549	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13035128	0.91[ASN][1000 genomes]
rs13035981	0.80[CHB][hapmap]
rs16823166	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16823284	0.80[CHB][hapmap]
rs1882625	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1900590	0.80[CHB][hapmap]
rs34113599	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34372952	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34607263	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34924549	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35563346	0.91[ASN][1000 genomes]
rs35864909	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016304	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36117473	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56354994	0.81[ASN][1000 genomes]
rs6430047	0.80[CHB][hapmap]
rs6714415	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754251	0.80[CHB][hapmap]
rs7564341	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7568511	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7569139	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7581136	0.89[GIH][hapmap]
rs7607672	0.86[GIH][hapmap]
rs7607751	0.82[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144544200-144558000	Weak transcription	Ovary	ovary
2	chr2:144553800-144564000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:144554000-144559000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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