Variant report

Variant	rs7568511
Chromosome Location	chr2:144523686-144523687
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144522273..144524723-chr2:144525420..144527346,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10205158	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12993352	0.81[ASN][1000 genomes]
rs13029549	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16823166	0.84[ASN][1000 genomes]
rs1882625	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34113599	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34372952	0.83[ASN][1000 genomes]
rs34607263	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34924549	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35864909	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36016304	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36117473	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6714415	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6735072	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7564341	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7569139	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7581136	0.83[CHB][hapmap];0.87[GIH][hapmap]
rs7607672	0.83[CHB][hapmap];0.84[GIH][hapmap]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144470200-144525400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr2:144477200-144525200	Weak transcription	Fetal Thymus	thymus
3	chr2:144486200-144523800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:144486800-144527600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:144488200-144525200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:144500000-144525400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:144500600-144524000	Weak transcription	Thymus	Thymus
8	chr2:144501000-144524000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr2:144509400-144525200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:144509400-144525200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:144509800-144525200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:144510000-144524000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:144510200-144523800	Weak transcription	Dnd41	blood
14	chr2:144510200-144525400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr2:144510400-144523800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:144510400-144525400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr2:144512000-144524800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr2:144512600-144525000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:144513000-144525200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:144517400-144525400	Weak transcription	GM12878-XiMat	blood
21	chr2:144519800-144527200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr2:144520200-144527600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:144520400-144527400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:144522000-144524000	Enhancers	Fetal Intestine Small	intestine
25	chr2:144522200-144526600	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:144522400-144525400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr2:144522400-144529800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:144522600-144527800	Strong transcription	Primary T cells from cord blood	blood
29	chr2:144523000-144526000	Weak transcription	Spleen	Spleen
30	chr2:144523200-144526200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:144523200-144529400	Strong transcription	Primary B cells from cord blood	blood
32	chr2:144523400-144528000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr2:144523600-144526800	Strong transcription	Primary B cells from peripheral blood	blood

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