Variant report

Variant	rs16823166
Chromosome Location	chr2:144583376-144583377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10205158	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12993352	0.95[ASN][1000 genomes]
rs13005318	0.86[ASN][1000 genomes]
rs13006296	0.86[ASN][1000 genomes]
rs13012919	0.94[ASN][1000 genomes]
rs13029549	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13035128	0.94[ASN][1000 genomes]
rs13035981	0.80[CHB][hapmap]
rs16823284	0.80[CHB][hapmap]
rs1882625	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900590	0.80[CHB][hapmap]
rs34113599	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34372952	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34607263	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34924549	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35563346	0.94[ASN][1000 genomes]
rs35864909	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36016304	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36117473	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56354994	0.84[ASN][1000 genomes]
rs6430047	0.80[CHB][hapmap]
rs6714415	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6735072	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6754251	0.80[CHB][hapmap]
rs7564341	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7568511	0.81[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.84[ASN][1000 genomes]
rs7569139	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7581136	0.86[GIH][hapmap]
rs7607672	0.84[GIH][hapmap]
rs7607751	0.83[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144574800-144591000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:144581600-144584400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:144582200-144583600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:144582200-144584200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:144582400-144583600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:144582400-144583600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:144582600-144583400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:144582800-144583600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:144582800-144590400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:144583000-144587400	Weak transcription	Fetal Stomach	stomach
11	chr2:144583200-144583600	Weak transcription	Brain Germinal Matrix	brain
12	chr2:144583200-144586400	Weak transcription	Fetal Muscle Leg	muscle

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