Variant report
| Variant | rs13044905 |
|---|---|
| Chromosome Location | chr20:16116961-16116962 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1359065 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1885941 | 0.83[ASN][1000 genomes] |
| rs1923951 | 0.98[ASN][1000 genomes] |
| rs1923952 | 0.83[ASN][1000 genomes] |
| rs2010736 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2224734 | 0.98[ASN][1000 genomes] |
| rs2476314 | 0.83[ASN][1000 genomes] |
| rs2476315 | 0.83[ASN][1000 genomes] |
| rs2476317 | 0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2760543 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2760546 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4814438 | 0.87[ASN][1000 genomes] |
| rs4814441 | 0.82[EUR][1000 genomes] |
| rs6034403 | 0.81[EUR][1000 genomes] |
| rs6043772 | 0.83[EUR][1000 genomes] |
| rs6043773 | 0.83[EUR][1000 genomes] |
| rs6080149 | 0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6080151 | 0.83[EUR][1000 genomes] |
| rs6080153 | 0.83[EUR][1000 genomes] |
| rs6110906 | 0.96[ASN][1000 genomes] |
| rs6110927 | 0.83[EUR][1000 genomes] |
| rs8114116 | 0.98[ASN][1000 genomes] |
| rs8114154 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1059778 | chr20:15999519-16165895 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv544207 | chr20:15999519-16165895 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:16104400-16121600 | Weak transcription | Primary B cells from cord blood | blood |
