Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13044905	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1885941	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1923951	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923952	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2010736	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2224734	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2476314	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2476315	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2476317	0.87[ASN][1000 genomes]
rs2760543	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2760545	0.96[EUR][1000 genomes]
rs2760546	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2760547	0.94[EUR][1000 genomes]
rs2760549	0.94[EUR][1000 genomes]
rs2760557	0.94[EUR][1000 genomes]
rs2788928	0.93[EUR][1000 genomes]
rs2788929	0.90[EUR][1000 genomes]
rs4814438	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6043770	0.81[EUR][1000 genomes]
rs6080149	0.82[ASN][1000 genomes]
rs6080150	0.81[EUR][1000 genomes]
rs6105564	1.00[JPT][hapmap]
rs6110906	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753665	0.94[EUR][1000 genomes]
rs8114116	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8114154	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1359065	STARD10	trans	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16104400-16121600	Weak transcription	Primary B cells from cord blood	blood
2	chr20:16109800-16113800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:16111200-16114000	Weak transcription	Right Atrium	heart
4	chr20:16111800-16113600	Weak transcription	Psoas Muscle	Psoas
5	chr20:16112200-16114200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr20:16113000-16115200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr20:16113400-16115600	Enhancers	Adipose Nuclei	Adipose

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