Variant report
Variant | rs2476315 |
---|---|
Chromosome Location | chr20:16099875-16099876 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13044905 | 0.83[ASN][1000 genomes] |
rs1359065 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1885941 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1923951 | 0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1923952 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2010736 | 0.83[ASN][1000 genomes] |
rs2224734 | 0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2476314 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2760543 | 0.83[ASN][1000 genomes] |
rs2760545 | 0.90[EUR][1000 genomes] |
rs2760546 | 0.90[EUR][1000 genomes] |
rs2760547 | 0.89[EUR][1000 genomes] |
rs2760549 | 0.88[EUR][1000 genomes] |
rs2760557 | 0.88[EUR][1000 genomes] |
rs2788928 | 0.88[EUR][1000 genomes] |
rs2788929 | 0.86[EUR][1000 genomes] |
rs4814438 | 0.82[EUR][1000 genomes] |
rs6110906 | 0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs753665 | 0.91[EUR][1000 genomes] |
rs8114116 | 0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs8114154 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1059778 | chr20:15999519-16165895 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv544207 | chr20:15999519-16165895 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | esv3424095 | chr20:16094018-16103817 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | n/a | n/a | inside rSNPs | n/a |
6 | esv3439085 | chr20:16094028-16103826 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16088400-16106000 | Weak transcription | Psoas Muscle | Psoas |
2 | chr20:16098000-16103600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |