Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13044905	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359065	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1885941	0.83[ASN][1000 genomes]
rs1923951	0.98[ASN][1000 genomes]
rs1923952	0.83[ASN][1000 genomes]
rs2010736	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224734	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2476314	0.83[ASN][1000 genomes]
rs2476315	0.83[ASN][1000 genomes]
rs2476317	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2760546	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4814438	0.87[ASN][1000 genomes]
rs4814441	0.81[EUR][1000 genomes]
rs6034403	0.82[EUR][1000 genomes]
rs6043772	0.82[EUR][1000 genomes]
rs6043773	0.82[EUR][1000 genomes]
rs6080149	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6080151	0.82[EUR][1000 genomes]
rs6080153	0.82[EUR][1000 genomes]
rs6105564	1.00[JPT][hapmap]
rs6110906	0.96[ASN][1000 genomes]
rs6110927	0.82[EUR][1000 genomes]
rs8114116	0.98[ASN][1000 genomes]
rs8114154	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2760543	HSPC072	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16104400-16121600	Weak transcription	Primary B cells from cord blood	blood
2	chr20:16109600-16110000	Weak transcription	Psoas Muscle	Psoas
3	chr20:16109600-16110200	Weak transcription	Left Ventricle	heart

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