Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13044905	0.96[ASN][1000 genomes]
rs1359065	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1885941	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1923951	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923952	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2010736	0.96[ASN][1000 genomes]
rs2224734	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2476314	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2476315	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2476317	0.84[ASN][1000 genomes]
rs2760543	0.96[ASN][1000 genomes]
rs2760545	0.91[EUR][1000 genomes]
rs2760546	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2760547	0.89[EUR][1000 genomes]
rs2760549	0.89[EUR][1000 genomes]
rs2760557	0.89[EUR][1000 genomes]
rs2788928	0.89[EUR][1000 genomes]
rs2788929	0.86[EUR][1000 genomes]
rs4814438	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs753665	0.91[EUR][1000 genomes]
rs8114116	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8114154	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1061301	chr20:16007489-16097070	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16085200-16089600	Weak transcription	Primary B cells from cord blood	blood
2	chr20:16085800-16089400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr20:16088400-16092000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:16088400-16092000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr20:16088400-16092800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr20:16088400-16106000	Weak transcription	Psoas Muscle	Psoas
7	chr20:16088600-16091200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:16088800-16090600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:16088800-16091200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr20:16088800-16092000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr20:16089000-16089600	Weak transcription	Spleen	Spleen
12	chr20:16089000-16096600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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