Variant report

Variant	rs1304598
Chromosome Location	chr8:107109953-107109954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107016577..107017130-chr8:107109768..107110481,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10505092	0.90[EUR][1000 genomes]
rs10955414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11776357	0.93[EUR][1000 genomes]
rs11776518	0.96[EUR][1000 genomes]
rs11777381	0.93[EUR][1000 genomes]
rs11779204	0.94[EUR][1000 genomes]
rs11780096	0.93[EUR][1000 genomes]
rs11781289	0.94[EUR][1000 genomes]
rs11782242	0.93[EUR][1000 genomes]
rs11783133	0.93[EUR][1000 genomes]
rs11783202	0.93[EUR][1000 genomes]
rs11783203	0.93[EUR][1000 genomes]
rs11785850	0.93[EUR][1000 genomes]
rs11993112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11995098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11996266	0.86[EUR][1000 genomes]
rs11996791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1304597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874162	0.93[EUR][1000 genomes]
rs16874196	0.81[EUR][1000 genomes]
rs16874206	0.81[EUR][1000 genomes]
rs28619047	0.93[EUR][1000 genomes]
rs56911473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410374	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60802190	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61262484	0.85[EUR][1000 genomes]
rs62526081	0.87[EUR][1000 genomes]
rs62527434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527437	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527438	0.96[EUR][1000 genomes]
rs62527444	0.93[EUR][1000 genomes]
rs62527453	0.93[EUR][1000 genomes]
rs62527457	0.93[EUR][1000 genomes]
rs62527458	0.93[EUR][1000 genomes]
rs62528960	0.93[EUR][1000 genomes]
rs62528961	0.93[EUR][1000 genomes]
rs62528969	0.89[EUR][1000 genomes]
rs6469047	0.85[EUR][1000 genomes]
rs6995297	0.88[EUR][1000 genomes]
rs7014163	0.96[EUR][1000 genomes]
rs7461771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813781	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815681	0.88[EUR][1000 genomes]
rs7822213	0.96[EUR][1000 genomes]
rs7826494	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7831526	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7832764	0.87[EUR][1000 genomes]
rs7841360	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842413	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107108600-107110400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:107108800-107110200	Weak transcription	Right Atrium	heart
3	chr8:107108800-107115200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:107109000-107116400	Weak transcription	Osteobl	bone
5	chr8:107109600-107110800	Weak transcription	Aorta	Aorta
6	chr8:107109800-107110000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:107109800-107110000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:107109800-107110000	Enhancers	Brain Substantia Nigra	brain

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