Variant report

Variant	rs28619047
Chromosome Location	chr8:107140005-107140006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107125049..107127217-chr8:107139054..107140794,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10505092	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10955414	0.93[EUR][1000 genomes]
rs11776357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11776518	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11777381	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779204	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11780096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11781289	0.96[EUR][1000 genomes]
rs11782242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783203	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11785850	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993112	0.93[EUR][1000 genomes]
rs11995098	0.93[EUR][1000 genomes]
rs11996266	0.87[EUR][1000 genomes]
rs11996791	0.93[EUR][1000 genomes]
rs1304597	0.93[EUR][1000 genomes]
rs1304598	0.93[EUR][1000 genomes]
rs16874162	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874196	0.87[EUR][1000 genomes]
rs16874206	0.87[EUR][1000 genomes]
rs56911473	0.93[EUR][1000 genomes]
rs60410374	0.85[EUR][1000 genomes]
rs60802190	0.96[EUR][1000 genomes]
rs61262484	0.91[EUR][1000 genomes]
rs62526081	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62527434	0.93[EUR][1000 genomes]
rs62527437	0.93[EUR][1000 genomes]
rs62527438	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62527443	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62527444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527453	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527457	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527458	0.92[EUR][1000 genomes]
rs62528960	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62528961	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62528969	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6469047	0.91[EUR][1000 genomes]
rs6995297	0.86[EUR][1000 genomes]
rs7014163	0.94[EUR][1000 genomes]
rs7461771	0.93[EUR][1000 genomes]
rs7813781	0.93[EUR][1000 genomes]
rs7815681	0.86[EUR][1000 genomes]
rs7822213	0.94[EUR][1000 genomes]
rs7826494	0.93[EUR][1000 genomes]
rs7831526	0.93[EUR][1000 genomes]
rs7832764	0.94[EUR][1000 genomes]
rs7841360	0.93[EUR][1000 genomes]
rs7842413	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107123600-107140400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107135600-107140400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107135600-107141200	Weak transcription	Osteobl	bone
4	chr8:107136800-107141400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:107138000-107140600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:107138400-107141600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:107138800-107140400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:107139000-107140800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:107139200-107141200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:107139200-107141200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:107139400-107140600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:107139400-107140600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:107139800-107140200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:107140000-107140600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:107140000-107140600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:107140000-107141600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr8:107140000-107142000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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