Variant report

Variant	rs16874196
Chromosome Location	chr8:107199567-107199568
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107194652..107196855-chr8:107198003..107200502,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10505092	0.90[EUR][1000 genomes]
rs10955414	0.81[EUR][1000 genomes]
rs11776357	0.87[EUR][1000 genomes]
rs11776518	0.85[EUR][1000 genomes]
rs11777381	0.87[EUR][1000 genomes]
rs11779204	0.83[EUR][1000 genomes]
rs11780096	0.87[EUR][1000 genomes]
rs11781289	0.83[EUR][1000 genomes]
rs11782242	0.87[EUR][1000 genomes]
rs11783133	0.87[EUR][1000 genomes]
rs11783202	0.87[EUR][1000 genomes]
rs11783203	0.87[EUR][1000 genomes]
rs11785850	0.87[EUR][1000 genomes]
rs11993112	0.81[EUR][1000 genomes]
rs11995098	0.81[EUR][1000 genomes]
rs11996266	0.86[EUR][1000 genomes]
rs11996791	0.81[EUR][1000 genomes]
rs1304597	0.81[EUR][1000 genomes]
rs1304598	0.81[EUR][1000 genomes]
rs16874162	0.87[EUR][1000 genomes]
rs16874206	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874228	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs16874237	0.81[EUR][1000 genomes]
rs28619047	0.87[EUR][1000 genomes]
rs28711258	0.83[EUR][1000 genomes]
rs56911473	0.81[EUR][1000 genomes]
rs60802190	0.84[EUR][1000 genomes]
rs61262484	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62526081	0.93[EUR][1000 genomes]
rs62527434	0.81[EUR][1000 genomes]
rs62527437	0.81[EUR][1000 genomes]
rs62527438	0.85[EUR][1000 genomes]
rs62527444	0.87[EUR][1000 genomes]
rs62527453	0.87[EUR][1000 genomes]
rs62527457	0.87[EUR][1000 genomes]
rs62527458	0.80[EUR][1000 genomes]
rs62528960	0.87[EUR][1000 genomes]
rs62528961	0.87[EUR][1000 genomes]
rs62528969	0.89[EUR][1000 genomes]
rs6469047	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6995297	0.85[EUR][1000 genomes]
rs7010241	0.89[CEU][hapmap]
rs7014163	0.82[EUR][1000 genomes]
rs7461771	0.81[EUR][1000 genomes]
rs7813781	0.81[EUR][1000 genomes]
rs7815681	0.85[EUR][1000 genomes]
rs7822213	0.82[EUR][1000 genomes]
rs7825348	0.83[EUR][1000 genomes]
rs7825353	0.82[EUR][1000 genomes]
rs7826494	0.81[EUR][1000 genomes]
rs7831526	0.81[EUR][1000 genomes]
rs7832764	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7841360	0.81[EUR][1000 genomes]
rs7842413	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107198800-107199600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:107199000-107199600	Enhancers	Brain Cingulate Gyrus	brain
3	chr8:107199000-107199800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:107199000-107199800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:107199000-107199800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:107199400-107203800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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