Variant report

Variant	rs62527457
Chromosome Location	chr8:107157995-107157996
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-778D12.2.1-2	chr8:107157947-107158745	XLOC_007180

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10505092	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10955414	0.93[EUR][1000 genomes]
rs11776357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11776518	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11777381	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779204	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11780096	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11781289	0.96[EUR][1000 genomes]
rs11782242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783133	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783202	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11783203	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11785850	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11993112	0.93[EUR][1000 genomes]
rs11995098	0.93[EUR][1000 genomes]
rs11996266	0.87[EUR][1000 genomes]
rs11996791	0.93[EUR][1000 genomes]
rs1304597	0.93[EUR][1000 genomes]
rs1304598	0.93[EUR][1000 genomes]
rs16874162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874196	0.87[EUR][1000 genomes]
rs16874206	0.87[EUR][1000 genomes]
rs28619047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56911473	0.93[EUR][1000 genomes]
rs60410374	0.85[EUR][1000 genomes]
rs60802190	0.96[EUR][1000 genomes]
rs61262484	0.91[EUR][1000 genomes]
rs62526081	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62527434	0.93[EUR][1000 genomes]
rs62527437	0.93[EUR][1000 genomes]
rs62527438	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62527443	0.82[EUR][1000 genomes]
rs62527444	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62527458	0.92[EUR][1000 genomes]
rs62528960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62528961	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62528969	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6469047	0.91[EUR][1000 genomes]
rs6995297	0.86[EUR][1000 genomes]
rs7014163	0.94[EUR][1000 genomes]
rs7461771	0.93[EUR][1000 genomes]
rs7813781	0.93[EUR][1000 genomes]
rs7815681	0.86[EUR][1000 genomes]
rs7822213	0.94[EUR][1000 genomes]
rs7826494	0.93[EUR][1000 genomes]
rs7831526	0.93[EUR][1000 genomes]
rs7832764	0.94[EUR][1000 genomes]
rs7841360	0.93[EUR][1000 genomes]
rs7842413	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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