Variant report

Variant	rs62526081
Chromosome Location	chr8:107174190-107174191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107173001..107175582-chr8:107177490..107179938,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1025352	0.81[AFR][1000 genomes]
rs10505092	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10955414	0.87[EUR][1000 genomes]
rs11776357	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11776518	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11777381	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11779204	0.90[EUR][1000 genomes]
rs11780096	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11781289	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11782242	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11783133	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11783202	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11783203	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11785850	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11993112	0.87[EUR][1000 genomes]
rs11995098	0.87[EUR][1000 genomes]
rs11996266	0.93[EUR][1000 genomes]
rs11996791	0.87[EUR][1000 genomes]
rs1304597	0.87[EUR][1000 genomes]
rs1304598	0.87[EUR][1000 genomes]
rs16874162	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16874196	0.93[EUR][1000 genomes]
rs16874206	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28619047	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56911473	0.87[EUR][1000 genomes]
rs60410374	0.80[EUR][1000 genomes]
rs60802190	0.90[EUR][1000 genomes]
rs61262484	0.97[EUR][1000 genomes]
rs62527434	0.87[EUR][1000 genomes]
rs62527437	0.87[EUR][1000 genomes]
rs62527438	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62527444	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62527453	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62527457	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62527458	0.86[EUR][1000 genomes]
rs62528960	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62528961	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62528969	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6469047	0.97[EUR][1000 genomes]
rs6995297	0.92[EUR][1000 genomes]
rs7014163	0.89[EUR][1000 genomes]
rs73698633	0.81[AFR][1000 genomes]
rs73698635	0.81[AFR][1000 genomes]
rs7461771	0.87[EUR][1000 genomes]
rs7813781	0.87[EUR][1000 genomes]
rs7815681	0.92[EUR][1000 genomes]
rs7822213	0.89[EUR][1000 genomes]
rs7826494	0.87[EUR][1000 genomes]
rs7831526	0.87[EUR][1000 genomes]
rs7832764	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841360	0.87[EUR][1000 genomes]
rs7842413	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107172200-107174800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:107172600-107174400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:107174000-107175000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:107174000-107175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:107174000-107175000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:107174000-107175000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:107174000-107175200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links