Variant report

Variant	rs13072126
Chromosome Location	chr3:68846530-68846531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11918673	0.81[EUR][1000 genomes]
rs13087144	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13433766	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13433979	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1873264	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2130439	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35508315	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36038335	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4093385	0.85[EUR][1000 genomes]
rs57640416	0.82[ASN][1000 genomes]
rs6773337	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72925176	0.82[ASN][1000 genomes]
rs7620715	0.81[EUR][1000 genomes]
rs931433	0.83[ASN][1000 genomes]
rs971092	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9866665	0.84[EUR][1000 genomes]
rs9867187	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv876930	chr3:68844213-68961010	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68844200-68846600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links