Variant report

Variant	rs1873264
Chromosome Location	chr3:68844213-68844214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11128091	0.83[ASN][1000 genomes]
rs11918673	0.86[EUR][1000 genomes]
rs13072126	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13087144	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13433766	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13433979	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1489996	0.82[ASN][1000 genomes]
rs1813868	0.84[ASN][1000 genomes]
rs2130439	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2171868	0.82[ASN][1000 genomes]
rs35508315	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36038335	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4093385	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56109105	0.80[ASN][1000 genomes]
rs56889723	0.82[ASN][1000 genomes]
rs57640416	0.90[ASN][1000 genomes]
rs58972171	0.82[ASN][1000 genomes]
rs59548135	0.84[ASN][1000 genomes]
rs6773337	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72925108	0.80[ASN][1000 genomes]
rs72925176	0.90[ASN][1000 genomes]
rs7620715	0.86[EUR][1000 genomes]
rs7621862	0.82[ASN][1000 genomes]
rs7623995	0.82[ASN][1000 genomes]
rs870241	0.82[ASN][1000 genomes]
rs931433	0.92[ASN][1000 genomes]
rs971092	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9817400	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9818001	0.84[EUR][1000 genomes]
rs9866665	0.89[EUR][1000 genomes]
rs9867187	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv876930	chr3:68844213-68961010	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68843800-68845000	Weak transcription	Fetal Brain Male	brain
2	chr3:68844200-68846600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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