Variant report

Variant	rs35508315
Chromosome Location	chr3:68812466-68812467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11128091	0.92[ASN][1000 genomes]
rs11918673	0.82[EUR][1000 genomes]
rs12163576	0.92[ASN][1000 genomes]
rs13072126	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13087144	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13433766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489996	0.93[ASN][1000 genomes]
rs17047972	0.80[ASN][1000 genomes]
rs1813868	0.90[ASN][1000 genomes]
rs1873264	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2130439	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2171868	0.92[ASN][1000 genomes]
rs36038335	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4093385	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56109105	0.95[ASN][1000 genomes]
rs56889723	0.93[ASN][1000 genomes]
rs57640416	0.86[ASN][1000 genomes]
rs58972171	0.94[ASN][1000 genomes]
rs59548135	0.90[ASN][1000 genomes]
rs6773337	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72925108	0.95[ASN][1000 genomes]
rs72925176	0.83[ASN][1000 genomes]
rs7612656	0.82[ASN][1000 genomes]
rs7620715	0.80[EUR][1000 genomes]
rs7623995	0.92[ASN][1000 genomes]
rs870241	0.92[ASN][1000 genomes]
rs931433	0.83[ASN][1000 genomes]
rs971092	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9817400	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9866665	0.83[EUR][1000 genomes]
rs9867187	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834722	chr3:68775036-68974120	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68808400-68813200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:68808800-68813200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:68809200-68813200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:68809200-68813600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:68810200-68813200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:68810200-68824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:68810800-68813200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:68811000-68813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:68811000-68813200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:68811000-68813600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:68811200-68813200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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