Variant report

Variant	rs13075569
Chromosome Location	chr3:88017849-88017850
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11128011	0.86[EUR][1000 genomes]
rs11720863	0.89[ASN][1000 genomes]
rs12490415	0.87[EUR][1000 genomes]
rs13075165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13098473	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320429	0.86[EUR][1000 genomes]
rs13326965	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1393916	0.85[EUR][1000 genomes]
rs1393918	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1393919	0.90[ASN][1000 genomes]
rs1393920	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1431150	0.90[ASN][1000 genomes]
rs1472688	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1560450	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1604697	0.85[EUR][1000 genomes]
rs1818163	0.85[EUR][1000 genomes]
rs1821027	0.86[EUR][1000 genomes]
rs1827534	0.87[ASN][1000 genomes]
rs1847305	0.86[EUR][1000 genomes]
rs1960034	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1975095	0.85[EUR][1000 genomes]
rs1983075	0.85[EUR][1000 genomes]
rs1991658	0.87[ASN][1000 genomes]
rs2195714	0.86[EUR][1000 genomes]
rs2195715	0.86[EUR][1000 genomes]
rs2195716	0.87[EUR][1000 genomes]
rs2915278	0.87[ASN][1000 genomes]
rs2915280	0.90[ASN][1000 genomes]
rs2915288	0.87[EUR][1000 genomes]
rs2915292	0.89[EUR][1000 genomes]
rs2915294	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2919260	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2919263	0.87[ASN][1000 genomes]
rs2919264	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2919267	0.87[EUR][1000 genomes]
rs2919274	0.87[ASN][1000 genomes]
rs2938275	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4333109	0.85[EUR][1000 genomes]
rs57019520	0.86[EUR][1000 genomes]
rs60635211	0.86[EUR][1000 genomes]
rs6551257	0.85[EUR][1000 genomes]
rs6551259	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6775200	0.88[EUR][1000 genomes]
rs6785104	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6792557	0.83[ASN][1000 genomes]
rs6807414	0.87[EUR][1000 genomes]
rs6807548	0.88[EUR][1000 genomes]
rs7426476	0.82[EUR][1000 genomes]
rs7434013	0.86[EUR][1000 genomes]
rs747821	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs749160	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7614415	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7629536	0.85[EUR][1000 genomes]
rs7635463	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7647245	0.86[EUR][1000 genomes]
rs7648805	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs923473	0.86[EUR][1000 genomes]
rs923474	0.84[EUR][1000 genomes]
rs9809386	0.85[EUR][1000 genomes]
rs9816966	0.88[EUR][1000 genomes]
rs9829833	0.86[EUR][1000 genomes]
rs9830274	0.86[EUR][1000 genomes]
rs9844893	0.85[EUR][1000 genomes]
rs9846032	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9852305	0.84[EUR][1000 genomes]
rs9856604	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9861035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872577	0.85[EUR][1000 genomes]
rs9917646	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88012400-88023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:88014400-88020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:88017800-88018400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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