Variant report

Variant	rs2915280
Chromosome Location	chr3:88012110-88012111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88011920..88014768-chr5:138939490..138942300,2	K562	blood:

Variant related genes	Relation type
ENSG00000131508	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11720863	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13075165	0.89[ASN][1000 genomes]
rs13075569	0.90[ASN][1000 genomes]
rs13098473	0.90[ASN][1000 genomes]
rs13326965	0.83[ASN][1000 genomes]
rs1393918	0.91[ASN][1000 genomes]
rs1393919	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393920	0.91[ASN][1000 genomes]
rs1431150	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472688	0.86[ASN][1000 genomes]
rs1560450	0.86[ASN][1000 genomes]
rs1827534	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1960034	0.84[ASN][1000 genomes]
rs1991658	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915278	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919260	0.88[ASN][1000 genomes]
rs2919263	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919264	0.88[ASN][1000 genomes]
rs2919274	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2938275	0.89[ASN][1000 genomes]
rs6551259	0.84[ASN][1000 genomes]
rs6785104	0.91[ASN][1000 genomes]
rs6792557	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs747821	0.91[ASN][1000 genomes]
rs749160	0.89[ASN][1000 genomes]
rs7635463	0.86[ASN][1000 genomes]
rs7648805	0.86[ASN][1000 genomes]
rs9846032	0.86[ASN][1000 genomes]
rs9861035	0.90[ASN][1000 genomes]
rs9917646	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88008200-88012600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:88009600-88012200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:88011600-88012400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:88011800-88013000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links