Variant report

Variant	rs749160
Chromosome Location	chr3:88009717-88009718
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:88003967..88006763-chr3:88008151..88011087,2	K562	blood:
2	chr3:88003967..88006887-chr3:88008151..88009977,2	K562	blood:
3	chr3:88006508..88009782-chr3:88012580..88015911,3	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11128011	0.86[EUR][1000 genomes]
rs11720863	0.87[ASN][1000 genomes]
rs12490415	0.87[EUR][1000 genomes]
rs13075165	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13075569	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13098473	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13320429	0.87[EUR][1000 genomes]
rs13326965	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1393916	0.86[EUR][1000 genomes]
rs1393918	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1393919	0.89[ASN][1000 genomes]
rs1393920	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1431150	0.89[ASN][1000 genomes]
rs1472688	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1560450	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1604697	0.86[EUR][1000 genomes]
rs1818163	0.86[EUR][1000 genomes]
rs1821027	0.86[EUR][1000 genomes]
rs1827534	0.86[ASN][1000 genomes]
rs1847305	0.86[EUR][1000 genomes]
rs1960034	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1975095	0.86[EUR][1000 genomes]
rs1983075	0.86[EUR][1000 genomes]
rs1991658	0.86[ASN][1000 genomes]
rs2195714	0.87[EUR][1000 genomes]
rs2195715	0.87[EUR][1000 genomes]
rs2195716	0.87[EUR][1000 genomes]
rs2915278	0.86[ASN][1000 genomes]
rs2915280	0.89[ASN][1000 genomes]
rs2915288	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2915292	0.89[EUR][1000 genomes]
rs2915294	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2919260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2919263	0.86[ASN][1000 genomes]
rs2919264	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2919267	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2919274	0.86[ASN][1000 genomes]
rs2938275	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333109	0.86[EUR][1000 genomes]
rs57019520	0.87[EUR][1000 genomes]
rs60635211	0.87[EUR][1000 genomes]
rs6551257	0.86[EUR][1000 genomes]
rs6551259	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6775200	0.88[EUR][1000 genomes]
rs6785104	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6792557	0.81[ASN][1000 genomes]
rs6807414	0.89[EUR][1000 genomes]
rs6807548	0.88[EUR][1000 genomes]
rs7426476	0.82[EUR][1000 genomes]
rs7434013	0.87[EUR][1000 genomes]
rs747821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7614415	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7629536	0.86[EUR][1000 genomes]
rs7635463	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7647245	0.86[EUR][1000 genomes]
rs7648805	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs923473	0.86[EUR][1000 genomes]
rs923474	0.85[EUR][1000 genomes]
rs9809386	0.85[EUR][1000 genomes]
rs9816966	0.88[EUR][1000 genomes]
rs9829833	0.86[EUR][1000 genomes]
rs9830274	0.86[EUR][1000 genomes]
rs9844893	0.87[EUR][1000 genomes]
rs9846032	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9852305	0.85[EUR][1000 genomes]
rs9856604	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9861035	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9872577	0.86[EUR][1000 genomes]
rs9917646	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs749160	HTR1F	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87995600-88011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:88005000-88011200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:88008200-88012600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:88009600-88012200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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