Variant report

Variant	rs6792557
Chromosome Location	chr3:88018913-88018914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11720863	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13075165	0.82[ASN][1000 genomes]
rs13075569	0.83[ASN][1000 genomes]
rs13098473	0.83[ASN][1000 genomes]
rs1393918	0.82[ASN][1000 genomes]
rs1393919	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1393920	0.82[ASN][1000 genomes]
rs1431150	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1827534	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1991658	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2915278	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2915280	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2919263	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2919274	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2938275	0.81[ASN][1000 genomes]
rs6785104	0.82[ASN][1000 genomes]
rs747821	0.82[ASN][1000 genomes]
rs749160	0.81[ASN][1000 genomes]
rs9861035	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88012400-88023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:88014400-88020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:88018400-88019200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr3:88018400-88019400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:88018400-88020200	Enhancers	Fetal Intestine Large	intestine
7	chr3:88018400-88020200	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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