Variant report

Variant	rs2919274
Chromosome Location	chr3:88015220-88015221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88006508..88009782-chr3:88012580..88015911,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11720863	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13075165	0.86[ASN][1000 genomes]
rs13075569	0.87[ASN][1000 genomes]
rs13098473	0.87[ASN][1000 genomes]
rs1393918	0.88[ASN][1000 genomes]
rs1393919	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1393920	0.88[ASN][1000 genomes]
rs1431150	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1472688	0.83[ASN][1000 genomes]
rs1560450	0.83[ASN][1000 genomes]
rs1827534	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960034	0.81[ASN][1000 genomes]
rs1991658	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915278	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915280	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919260	0.91[ASN][1000 genomes]
rs2919263	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919264	0.91[ASN][1000 genomes]
rs2938275	0.86[ASN][1000 genomes]
rs6551259	0.81[ASN][1000 genomes]
rs6785104	0.88[ASN][1000 genomes]
rs6792557	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs747821	0.88[ASN][1000 genomes]
rs749160	0.86[ASN][1000 genomes]
rs7635463	0.83[ASN][1000 genomes]
rs7648805	0.83[ASN][1000 genomes]
rs9846032	0.83[ASN][1000 genomes]
rs9861035	0.87[ASN][1000 genomes]
rs9917646	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88012400-88023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:88014400-88020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:88015200-88015400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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