Variant report

Variant	rs13089332
Chromosome Location	chr3:56675265-56675266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56668675..56670931-chr3:56674761..56676803,3	K562	blood:
2	chr3:56672511..56675484-chr3:56675604..56678156,3	K562	blood:
3	chr3:56668549..56671040-chr3:56673314..56676261,3	K562	blood:
4	chr3:56674826..56677137-chr3:56716551..56718515,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs13060656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13068670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13072654	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13074639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13080003	0.93[EUR][1000 genomes]
rs13086565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13088166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13095165	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1826119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34097767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34171578	0.93[EUR][1000 genomes]
rs34284682	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34349699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34480364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34720351	0.93[EUR][1000 genomes]
rs34885435	0.93[EUR][1000 genomes]
rs34911835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35070694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35286628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35418695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35564119	0.93[EUR][1000 genomes]
rs35677810	0.93[EUR][1000 genomes]
rs35689307	0.86[EUR][1000 genomes]
rs35728519	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35785755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35803417	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35940731	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35995233	0.93[EUR][1000 genomes]
rs36029237	0.93[EUR][1000 genomes]
rs36064180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36131262	0.93[EUR][1000 genomes]
rs3732506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4060982	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4538344	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4635676	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6807338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71309963	0.93[EUR][1000 genomes]
rs71309964	0.93[EUR][1000 genomes]
rs71309965	0.93[EUR][1000 genomes]
rs71309970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71309972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71309973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71309975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71621834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7431634	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
8	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
10	chr3:56656200-56683000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:56657400-56683800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:56657600-56675800	Strong transcription	Fetal Muscle Leg	muscle
13	chr3:56657800-56678000	Weak transcription	Fetal Brain Male	brain
14	chr3:56659400-56676200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:56664000-56688000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
18	chr3:56664800-56687400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr3:56664800-56711000	Strong transcription	Dnd41	blood
20	chr3:56665000-56687800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:56665000-56690400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:56665200-56686600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:56665200-56691800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:56665400-56683200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:56665400-56687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:56665600-56676200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:56665800-56687400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:56665800-56687400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:56666000-56675800	Strong transcription	Primary T cells from cord blood	blood
33	chr3:56666000-56686800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr3:56666600-56675600	Strong transcription	Hela-S3	cervix
36	chr3:56666600-56676600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:56666800-56675800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:56666800-56675800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr3:56667000-56684400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:56668000-56675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:56668000-56675400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr3:56668000-56680400	Weak transcription	NHEK	skin
43	chr3:56668000-56688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
45	chr3:56669200-56677600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:56669200-56686400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr3:56669600-56703800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:56669800-56675400	Weak transcription	Small Intestine	intestine
49	chr3:56670000-56687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:56670200-56675800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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