Variant report

Variant	rs35286628
Chromosome Location	chr3:56708102-56708103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:56707812-56708335	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:56707629-56709008	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr3:56707569-56709345	K562	blood:	n/a	n/a
4	POLR2A	chr3:56707918-56708199	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56705021..56708606-chr3:56714722..56718211,5	MCF-7	breast:

Variant related genes	Relation type
FAM208A	TF binding region
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13060656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072654	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074639	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086565	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089169	1.00[ASN][1000 genomes]
rs13089332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13090343	0.89[ASN][1000 genomes]
rs13095165	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825529	1.00[ASN][1000 genomes]
rs1826119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34097767	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34171578	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34284682	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34349699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34480364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34720351	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34869541	1.00[ASN][1000 genomes]
rs34885435	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34911835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953718	1.00[ASN][1000 genomes]
rs35070694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35418695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35564119	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677810	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35689307	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728519	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35785755	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35803417	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940731	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995233	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36029237	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36064180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36131262	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4060982	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538344	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635676	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6807338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309961	1.00[ASN][1000 genomes]
rs71309962	1.00[ASN][1000 genomes]
rs71309963	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71309964	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309965	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309975	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71621834	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72499037	0.83[AFR][1000 genomes]
rs7431634	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:56664800-56711000	Strong transcription	Dnd41	blood
5	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:56684400-56715200	Weak transcription	Fetal Heart	heart
7	chr3:56687600-56708200	Strong transcription	Hela-S3	cervix
8	chr3:56689000-56708200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:56694400-56708800	Weak transcription	Right Ventricle	heart
10	chr3:56695400-56716000	Weak transcription	Fetal Brain Male	brain
11	chr3:56695600-56711400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:56695600-56715600	Weak transcription	Stomach Mucosa	stomach
13	chr3:56699600-56716000	Weak transcription	Fetal Kidney	kidney
14	chr3:56699600-56716200	Weak transcription	Spleen	Spleen
15	chr3:56699800-56716000	Weak transcription	Aorta	Aorta
16	chr3:56701800-56716000	Weak transcription	Psoas Muscle	Psoas
17	chr3:56702400-56715400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:56702400-56716200	Weak transcription	Small Intestine	intestine
19	chr3:56702600-56708200	Strong transcription	GM12878-XiMat	blood
20	chr3:56702600-56710000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:56702600-56715800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:56702600-56716000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:56702600-56716000	Weak transcription	Colonic Mucosa	Colon
24	chr3:56702800-56712800	Weak transcription	Fetal Brain Female	brain
25	chr3:56702800-56713400	Weak transcription	Brain Substantia Nigra	brain
26	chr3:56702800-56715800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:56703000-56716200	Weak transcription	Ovary	ovary
28	chr3:56703200-56716000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr3:56703400-56713600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:56703600-56715400	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:56704000-56709800	Weak transcription	K562	blood
32	chr3:56704000-56713200	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:56704000-56714200	Weak transcription	NHLF	lung
34	chr3:56704600-56713400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:56704600-56714200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:56704800-56711600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:56704800-56714200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:56704800-56714200	Weak transcription	NHEK	skin
39	chr3:56704800-56714400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr3:56704800-56714800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:56704800-56714800	Weak transcription	HMEC	breast
42	chr3:56704800-56715600	Weak transcription	HSMMtube	muscle
43	chr3:56704800-56715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:56704800-56716000	Weak transcription	Brain Germinal Matrix	brain
45	chr3:56704800-56716200	Weak transcription	Left Ventricle	heart
46	chr3:56705200-56711200	Weak transcription	HepG2	liver
47	chr3:56705200-56713400	Weak transcription	A549	lung
48	chr3:56705200-56715200	Weak transcription	Thymus	Thymus
49	chr3:56705200-56716000	Weak transcription	Fetal Lung	lung
50	chr3:56705200-56716000	Weak transcription	Fetal Muscle Trunk	muscle

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