Variant report

Variant	rs71309961
Chromosome Location	chr3:56584098-56584099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56583673..56586258-chr3:56588811..56591335,4	MCF-7	breast:
2	chr3:56583067..56585146-chr3:56589206..56592962,3	K562	blood:

Variant related genes	Relation type
ENSG00000180376	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs13060656	1.00[ASN][1000 genomes]
rs13068670	1.00[ASN][1000 genomes]
rs13072654	1.00[ASN][1000 genomes]
rs13074639	1.00[ASN][1000 genomes]
rs13080003	1.00[ASN][1000 genomes]
rs13086565	1.00[ASN][1000 genomes]
rs13088166	1.00[ASN][1000 genomes]
rs13089169	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090343	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13095165	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17825529	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1826119	1.00[ASN][1000 genomes]
rs34097767	0.88[ASN][1000 genomes]
rs34171578	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34284682	0.85[ASN][1000 genomes]
rs34349699	1.00[ASN][1000 genomes]
rs34480364	1.00[ASN][1000 genomes]
rs34720351	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34869541	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34885435	0.88[ASN][1000 genomes]
rs34911835	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34953718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35070694	0.94[ASN][1000 genomes]
rs35286628	1.00[ASN][1000 genomes]
rs35418695	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35564119	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35677810	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35689307	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35728519	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35785755	1.00[ASN][1000 genomes]
rs35803417	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35940731	1.00[ASN][1000 genomes]
rs35995233	1.00[ASN][1000 genomes]
rs36029237	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs36064180	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs36131262	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3732506	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4060982	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4538344	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4635676	0.85[AFR][1000 genomes]
rs6807338	1.00[ASN][1000 genomes]
rs71309962	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309963	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs71309964	1.00[ASN][1000 genomes]
rs71309965	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71309970	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71309972	1.00[ASN][1000 genomes]
rs71309973	1.00[ASN][1000 genomes]
rs71309975	1.00[ASN][1000 genomes]
rs71621834	1.00[ASN][1000 genomes]
rs7431634	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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