Variant report

Variant	rs34885435
Chromosome Location	chr3:56566525-56566526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs13060656	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13068670	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13072654	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13074639	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13080003	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13086565	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13088166	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13089169	0.88[ASN][1000 genomes]
rs13089332	0.93[EUR][1000 genomes]
rs13095165	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17825529	0.88[ASN][1000 genomes]
rs1826119	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34097767	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34171578	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34284682	0.89[EUR][1000 genomes]
rs34349699	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34480364	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34720351	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34869541	0.88[ASN][1000 genomes]
rs34911835	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34953718	0.88[ASN][1000 genomes]
rs35070694	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35286628	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35418695	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35564119	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35677810	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35689307	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35728519	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35785755	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35803417	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35940731	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35995233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36029237	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36064180	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36131262	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3732506	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4060982	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4538344	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4635676	0.93[EUR][1000 genomes]
rs6807338	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71309961	0.88[ASN][1000 genomes]
rs71309962	0.88[ASN][1000 genomes]
rs71309963	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71309964	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71309965	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71309970	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71309972	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71309973	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71309975	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71621834	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7431634	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56565400-56566600	Weak transcription	Fetal Brain Female	brain

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