Variant report

Variant	rs34720351
Chromosome Location	chr3:56629299-56629300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs13060656	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068670	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074639	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086565	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088166	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089169	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13089332	0.93[EUR][1000 genomes]
rs13090343	0.89[ASN][1000 genomes]
rs13095165	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825529	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1826119	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34097767	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34171578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34284682	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34349699	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34480364	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34869541	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34885435	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34911835	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953718	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35070694	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35286628	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35418695	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35564119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35689307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35728519	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35785755	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35803417	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35940731	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995233	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36029237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36064180	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36131262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732506	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4060982	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538344	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635676	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6807338	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309961	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71309962	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71309963	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71309964	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309970	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309972	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309973	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71309975	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71621834	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7431634	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv460557	chr3:56594735-56661320	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv590362	chr3:56594735-56661320	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56592400-56639800	Weak transcription	Right Ventricle	heart
2	chr3:56592400-56644800	Weak transcription	Small Intestine	intestine
3	chr3:56592800-56644600	Weak transcription	Fetal Heart	heart
4	chr3:56600600-56640000	Weak transcription	NHLF	lung
5	chr3:56603000-56631600	Weak transcription	Fetal Brain Male	brain
6	chr3:56603200-56650400	Weak transcription	K562	blood
7	chr3:56603600-56640000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:56605600-56639600	Weak transcription	Pancreas	Pancrea
9	chr3:56605800-56639400	Weak transcription	Spleen	Spleen
10	chr3:56605800-56639600	Weak transcription	Esophagus	oesophagus
11	chr3:56606200-56650200	Weak transcription	Colonic Mucosa	Colon
12	chr3:56607800-56629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:56607800-56639800	Weak transcription	HSMMtube	muscle
14	chr3:56607800-56650200	Weak transcription	Psoas Muscle	Psoas
15	chr3:56609400-56638600	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:56616200-56633800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:56616400-56639400	Weak transcription	Lung	lung
18	chr3:56617200-56629400	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:56617200-56629400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:56617200-56629800	Weak transcription	Hela-S3	cervix
21	chr3:56617200-56630000	Weak transcription	Fetal Stomach	stomach
22	chr3:56617200-56639200	Weak transcription	Thymus	Thymus
23	chr3:56617200-56639600	Weak transcription	Aorta	Aorta
24	chr3:56617400-56629400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:56617400-56639800	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:56617400-56639800	Weak transcription	Dnd41	blood
27	chr3:56618800-56631800	Weak transcription	Fetal Intestine Small	intestine
28	chr3:56619200-56639600	Weak transcription	Gastric	stomach
29	chr3:56619200-56639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:56623000-56639600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:56624600-56629800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:56624800-56629800	Weak transcription	Ovary	ovary
33	chr3:56624800-56639600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:56624800-56639800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:56625200-56633200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr3:56625200-56639600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:56625200-56639600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:56625200-56639600	Weak transcription	HMEC	breast
39	chr3:56625200-56640000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:56625200-56640000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:56625200-56650400	Weak transcription	NHEK	skin
42	chr3:56625200-56653400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr3:56625600-56639600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:56625800-56631200	Weak transcription	Brain Germinal Matrix	brain
45	chr3:56626200-56633000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:56626400-56629400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:56626400-56629600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr3:56626400-56656200	Weak transcription	Stomach Mucosa	stomach
49	chr3:56626600-56629400	Weak transcription	Brain Substantia Nigra	brain
50	chr3:56626800-56631600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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