Variant report

Variant	rs13089544
Chromosome Location	chr3:46183561-46183562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10510748	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10510749	0.86[ASN][1000 genomes]
rs13059906	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13061548	0.84[ASN][1000 genomes]
rs13062450	0.84[ASN][1000 genomes]
rs13069467	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13069750	0.86[ASN][1000 genomes]
rs13069845	0.84[ASN][1000 genomes]
rs13075836	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13080979	0.84[ASN][1000 genomes]
rs13083881	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13083914	0.83[ASN][1000 genomes]
rs13084057	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13084175	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13086063	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13089907	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13090848	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13096325	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13096873	0.81[ASN][1000 genomes]
rs13097340	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13097666	0.81[ASN][1000 genomes]
rs13098911	0.84[ASN][1000 genomes]
rs17216717	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17282797	0.84[ASN][1000 genomes]
rs17282922	0.84[ASN][1000 genomes]
rs3091314	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34013035	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34059564	0.86[ASN][1000 genomes]
rs34101673	0.86[ASN][1000 genomes]
rs34134191	0.86[ASN][1000 genomes]
rs34198655	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34340501	0.86[ASN][1000 genomes]
rs34378541	0.84[ASN][1000 genomes]
rs34401473	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34409248	0.86[ASN][1000 genomes]
rs34523728	0.86[ASN][1000 genomes]
rs34558763	0.92[EUR][1000 genomes]
rs34567015	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34570200	0.86[ASN][1000 genomes]
rs34693386	0.86[ASN][1000 genomes]
rs34870159	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34897745	0.86[ASN][1000 genomes]
rs34920132	0.84[ASN][1000 genomes]
rs34996127	0.86[ASN][1000 genomes]
rs35178150	0.81[EUR][1000 genomes]
rs35288652	0.83[ASN][1000 genomes]
rs35434266	0.83[ASN][1000 genomes]
rs35560301	0.86[ASN][1000 genomes]
rs35566550	0.83[ASN][1000 genomes]
rs35685805	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35754688	0.81[EUR][1000 genomes]
rs35853141	0.86[ASN][1000 genomes]
rs35919278	0.83[ASN][1000 genomes]
rs35942803	0.83[ASN][1000 genomes]
rs35960950	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36010446	0.84[ASN][1000 genomes]
rs36189995	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4443214	0.86[ASN][1000 genomes]
rs4493469	0.86[ASN][1000 genomes]
rs6765904	0.86[ASN][1000 genomes]
rs71327035	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327036	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71327038	0.86[ASN][1000 genomes]
rs7631551	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46173800-46184400	Weak transcription	Spleen	Spleen
2	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:46182400-46184200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:46183000-46184600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:46183000-46187200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:46183200-46183600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:46183200-46184600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:46183400-46183600	Enhancers	Primary B cells from cord blood	blood

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