Variant report

Variant	rs10510749
Chromosome Location	chr3:46180416-46180417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46178586..46180657-chr3:46195639..46197160,2	MCF-7	breast:
2	chr3:46165088..46167964-chr3:46179525..46182500,2	MCF-7	breast:

Extended variants
information (count: 139 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10510748	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10510750	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11919943	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs11926063	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11929489	0.85[EUR][1000 genomes]
rs13059906	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13061548	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13062450	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13062523	0.85[EUR][1000 genomes]
rs13067058	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[TSI][hapmap]
rs13068572	0.85[ASN][1000 genomes]
rs13069467	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13069750	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069845	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13070099	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs13073976	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs13075270	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];0.87[EUR][1000 genomes]
rs13075836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13080979	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13082995	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083881	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13083914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13084057	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13084175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13086063	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13088766	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs13089544	0.86[ASN][1000 genomes]
rs13089907	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13090848	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13092160	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs13095940	0.92[EUR][1000 genomes]
rs13095946	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes]
rs13096307	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs13096325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13096371	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs13096808	1.00[CEU][hapmap]
rs13096873	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13097340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097666	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098911	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13100243	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs1542755	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[TSI][hapmap]
rs17078660	0.95[LWK][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes]
rs17078704	0.87[ASN][1000 genomes]
rs17216717	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17217831	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17282797	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17282922	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17283712	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs2373156	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3091310	1.00[CEU][hapmap]
rs3091314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3136667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs3136672	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3136673	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3176824	0.88[EUR][1000 genomes]
rs3176825	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs3176826	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs3181076	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs3181078	0.93[EUR][1000 genomes]
rs3181080	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[EUR][1000 genomes]
rs34013035	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34047458	0.90[EUR][1000 genomes]
rs34059564	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34101673	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34134191	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34198655	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34280313	0.93[EUR][1000 genomes]
rs34340501	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376347	0.83[EUR][1000 genomes]
rs34378541	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34401473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409248	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34423195	0.93[EUR][1000 genomes]
rs34498313	0.85[EUR][1000 genomes]
rs34523728	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34531115	0.90[EUR][1000 genomes]
rs34558763	0.86[EUR][1000 genomes]
rs34567015	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34570200	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34611049	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625088	0.90[EUR][1000 genomes]
rs34693386	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34759782	0.85[EUR][1000 genomes]
rs34865316	0.92[EUR][1000 genomes]
rs34870159	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34897745	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34919616	0.93[EUR][1000 genomes]
rs34920132	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34985947	0.85[EUR][1000 genomes]
rs34996127	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111399	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35178150	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35195804	0.85[EUR][1000 genomes]
rs35288652	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35335084	0.90[EUR][1000 genomes]
rs35354367	0.93[EUR][1000 genomes]
rs35429781	0.90[EUR][1000 genomes]
rs35434266	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35560301	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35566550	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35587265	0.90[EUR][1000 genomes]
rs35614049	0.90[EUR][1000 genomes]
rs35617677	0.90[EUR][1000 genomes]
rs35685805	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35754688	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35775079	0.90[EUR][1000 genomes]
rs35853141	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35919278	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35942803	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35960950	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35984988	0.85[EUR][1000 genomes]
rs36010446	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36189995	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774630	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41406247	0.82[AFR][1000 genomes]
rs41432345	0.89[EUR][1000 genomes]
rs41461744	0.82[AFR][1000 genomes]
rs41537946	0.85[EUR][1000 genomes]
rs4443214	0.93[ASN][1000 genomes]
rs4493469	1.00[ASN][1000 genomes]
rs4987053	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs57115330	0.84[EUR][1000 genomes]
rs6765904	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775046	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs71327035	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327036	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327038	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327039	0.90[EUR][1000 genomes]
rs7620586	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7624155	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7628489	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7631551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7651539	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs902761	0.84[AFR][1000 genomes]
rs9832730	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs9838191	1.00[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10510749	CCR1	cis	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46173800-46184400	Weak transcription	Spleen	Spleen
2	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:46174200-46183400	Weak transcription	Primary B cells from cord blood	blood
4	chr3:46174400-46183200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:46177000-46182400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:46178200-46183000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:46179000-46183000	Weak transcription	Monocytes-CD14+_RO01746	blood

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