Variant report

Variant	rs34919616
Chromosome Location	chr3:46250008-46250009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:263)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:263 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr3:46249763-46250312	GM12878	blood:	n/a	n/a
2	CTCF	chr3:46249905-46250100	Pancreas_OC	pancreas:	n/a	n/a
3	EP300	chr3:46249565-46250153	GM12878	blood:	n/a	n/a
4	ELF1	chr3:46249584-46250293	GM12878	blood:	n/a	n/a
5	CTCF	chr3:46249902-46250094	Kidney_OC	kidney:	n/a	n/a
6	CTCF	chr3:46249785-46250131	HepG2	liver:	n/a	n/a
7	SMC3	chr3:46249612-46250188	Hela-S3	cervix:	n/a	n/a
8	CTCF	chr3:46249556-46250130	K562	blood:	n/a	n/a
9	CTCF	chr3:46249911-46250088	GM13976	blood:	n/a	n/a
10	RAD21	chr3:46249535-46250195	H1-hESC	embryonic stem cell:	n/a	chr3:46249723-46249735
11	CTCF	chr3:46249880-46250030	Hela-S3	cervix:	n/a	n/a
12	RAD21	chr3:46249552-46250206	GM12878	blood:	n/a	chr3:46249723-46249735
13	STAT3	chr3:46249867-46250043	MCF10A-Er-Src	breast:	n/a	chr3:46249996-46250016 chr3:46249999-46250013 chr3:46250002-46250011 chr3:46250000-46250011 chr3:46250001-46250010
14	YY1	chr3:46249746-46250067	K562	blood:	n/a	n/a
15	CTCF	chr3:46249920-46250070	HA-sp	spinal cord:	n/a	n/a
16	CTCF	chr3:46249940-46250090	GM12867	blood:	n/a	n/a
17	BCLAF1	chr3:46249498-46250177	GM12878	blood:	n/a	n/a
18	SPI1	chr3:46249666-46250565	HL-60	blood:	n/a	chr3:46249941-46249954
19	CTCF	chr3:46249900-46250050	HPAF	blood vessel:	n/a	n/a
20	CTCF	chr3:46249980-46250130	WI-38	lung:	n/a	n/a
21	CTCF	chr3:46249884-46250120	ProgFib	skin:	n/a	n/a
22	RAD21	chr3:46249461-46250323	HCT-116	colon:	n/a	chr3:46249723-46249735
23	MTA3	chr3:46249489-46250232	GM12878	blood:	n/a	n/a
24	CTCF	chr3:46249960-46250110	HMEC	breast:	n/a	n/a
25	NFIC	chr3:46249295-46250211	GM12878	blood:	n/a	n/a
26	BHLHE40	chr3:46249563-46250134	GM12878	blood:	n/a	n/a
27	CTCF	chr3:46249874-46250158	GM12892	blood:	n/a	n/a
28	CTCF	chr3:46249960-46250110	HVMF	connective:	n/a	n/a
29	CTCF	chr3:46249899-46250068	GM20000	blood:	n/a	n/a
30	CTCF	chr3:46249681-46250184	K562	blood:	n/a	n/a
31	CTCF	chr3:46249875-46250163	GM19239	blood:	n/a	n/a
32	CTCF	chr3:46249900-46250050	GM12873	blood:	n/a	n/a
33	CTCF	chr3:46249900-46250050	HEEpiC	esophagus:	n/a	n/a
34	CTCF	chr3:46249940-46250090	GM12865	blood:	n/a	n/a
35	CTCF	chr3:46249428-46250401	HCT-116	colon:	n/a	n/a
36	CEBPB	chr3:46249844-46250098	GM12878	blood:	n/a	n/a
37	CTCF	chr3:46249873-46250112	Hela-S3	cervix:	n/a	n/a
38	SMC3	chr3:46249788-46250151	HepG2	liver:	n/a	n/a
39	PAX5	chr3:46249768-46250139	GM12878	blood:	n/a	n/a
40	EP300	chr3:46249572-46250297	GM12878	blood:	n/a	chr3:46250232-46250246 chr3:46250229-46250243
41	CTCF	chr3:46249980-46250130	GM12872	blood:	n/a	n/a
42	RAD21	chr3:46249576-46250191	H1-hESC	embryonic stem cell:	n/a	chr3:46249723-46249735
43	ZNF143	chr3:46249853-46250113	Hela-S3	cervix:	n/a	chr3:46250078-46250096
44	CTCF	chr3:46249880-46250030	SK-N-SH_RA	brain:	n/a	n/a
45	IKZF1	chr3:46249578-46250240	GM12878	blood:	n/a	n/a
46	HNF4A	chr3:46249739-46250099	HepG2	liver:	n/a	chr3:46249935-46249947 chr3:46249935-46249947 chr3:46249934-46249949 chr3:46249934-46249949 chr3:46249934-46249949 chr3:46249935-46249947 chr3:46249936-46249948
47	CTCF	chr3:46249900-46250050	GM12866	blood:	n/a	n/a
48	CTCF	chr3:46249940-46250090	RPTEC	kidney:	n/a	n/a
49	CTCF	chr3:46249918-46250030	HUVEC	blood vessel:	n/a	n/a
50	CTCF	chr3:46249940-46250090	WERI-Rb-1	eye:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:46249985-46250035	GM06990	blood:	n/a
2	chr3:46249985-46250035	Hepatocyte	liver:	n/a
3	chr3:46249985-46250035	LNCaP	prostate:	n/a
4	chr3:46249985-46250035	HUVEC	blood vessel:	n/a
5	chr3:46249985-46250035	AG04450	lung:	fetal
6	chr3:46249985-46250035	PrEC	prostate:	n/a
7	chr3:46249985-46250035	ProgFib	skin:	n/a
8	chr3:46249985-46250035	Jurkat	blood:	n/a
9	chr3:46249985-46250035	HEEpiC	esophagus:	n/a
10	chr3:46249985-46250035	HIPEpiC	eye:	n/a
11	chr3:46249985-46250035	HCPEpiC	choroid plexus:	n/a
12	chr3:46249985-46250035	RPTEC	kidney:	n/a
13	chr3:46249985-46250035	NHDF-neo	bronchial:	n/a
14	chr3:46249985-46250035	IMR90	lung:	fetal
15	chr3:46249985-46250035	AG04449	skin:	fetal
16	chr3:46249985-46250035	PFSK-1	brain:	n/a
17	chr3:46249985-46250035	GM19239	blood:	n/a
18	chr3:46249985-46250035	Caco-2	colon:	n/a
19	chr3:46249985-46250035	HCM	heart:	n/a
20	chr3:46249985-46250035	HCF	heart:	n/a
21	chr3:46249985-46250035	PANC-1	pancreas:	n/a
22	chr3:46249985-46250035	GM12892	blood:	n/a
23	chr3:46249985-46250035	HNPCEpiC	eye:	n/a
24	chr3:46249985-46250035	GM12891	blood:	n/a
25	chr3:46249985-46250035	U87	brain:	n/a
26	chr3:46249985-46250035	AG09309	skin:	n/a
27	chr3:46249985-46250035	AG10803	skin:	n/a
28	chr3:46249985-46250035	HRE	kidney:	n/a
29	chr3:46249985-46250035	Hela-S3	cervix:	n/a
30	chr3:46249985-46250035	HPAEpiC	pulmonary alveolar:	n/a
31	chr3:46249985-46250035	AoSMC	blood vessel:	n/a
32	chr3:46249985-46250035	NHBE	bronchial:	n/a
33	chr3:46249985-46250035	HepG2	liver:	n/a
34	chr3:46249985-46250035	NB4	blood:	n/a
35	chr3:46249985-46250035	HL-60	blood:	n/a
36	chr3:46249985-46250035	SAEC	small airway:	n/a
37	chr3:46249985-46250035	AG09319	gingival:	n/a
38	chr3:46249985-46250035	HCT-116	colon:	n/a
39	chr3:46249985-46250035	HMEC	breast:	n/a
40	chr3:46249985-46250035	K562	blood:	n/a
41	chr3:46249985-46250035	MCF-7	breast:	n/a
42	chr3:46249985-46250035	HRPEpiC	eye:	n/a
43	chr3:46249985-46250035	CMK	blood:	n/a
44	chr3:46249985-46250035	GM12878	blood:	n/a
45	chr3:46249985-46250035	NT2-D1	testis:	n/a
46	chr3:46249985-46250035	MCF10A-Er-Src	breast:	n/a
47	chr3:46249985-46250035	HEK293	kidney:	embryo
48	chr3:46249985-46250035	HRCEpiC	kidney:	n/a
49	chr3:46249985-46250035	ovcar-3	ovarian:	n/a
50	chr3:46249985-46250035	BE2_C	brain:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46202705..46205195-chr3:46247195..46250047,2	MCF-7	breast:

No data

Variant related genes	Relation type
CCR1	TF binding region
CCR1	CpG island
ENSG00000183625	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10510748	0.91[EUR][1000 genomes]
rs10510749	0.93[EUR][1000 genomes]
rs10510750	1.00[AFR][1000 genomes]
rs11919943	1.00[ASN][1000 genomes]
rs11926063	1.00[ASN][1000 genomes]
rs11929489	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13059906	0.93[EUR][1000 genomes]
rs13060713	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13060802	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13061548	0.93[EUR][1000 genomes]
rs13062450	0.93[EUR][1000 genomes]
rs13062523	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067058	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13069467	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13069750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13069845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13070099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075270	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075836	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13080979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13082995	0.93[EUR][1000 genomes]
rs13083881	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13083914	0.93[EUR][1000 genomes]
rs13084057	0.92[EUR][1000 genomes]
rs13084175	0.92[EUR][1000 genomes]
rs13088766	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089907	0.93[EUR][1000 genomes]
rs13090848	0.91[EUR][1000 genomes]
rs13092160	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096325	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13096371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13096808	1.00[AFR][1000 genomes]
rs13096873	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13096905	1.00[AFR][1000 genomes]
rs13097340	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13097666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13098911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1542755	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17216717	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17282797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17282922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2131092	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2373156	1.00[ASN][1000 genomes]
rs3091314	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3136672	0.93[EUR][1000 genomes]
rs3136673	0.93[EUR][1000 genomes]
rs3176824	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33998492	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34005848	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34013035	0.93[EUR][1000 genomes]
rs34047458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34059564	0.93[EUR][1000 genomes]
rs34101673	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34134191	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34194160	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34198655	0.93[EUR][1000 genomes]
rs34280313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34289272	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34340501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34376347	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34378541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34401473	0.92[EUR][1000 genomes]
rs34406035	1.00[AFR][1000 genomes]
rs34409248	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34414382	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34423195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498313	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34523728	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34531115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558763	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34567015	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34570200	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34611049	0.93[EUR][1000 genomes]
rs34625088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34677490	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34692251	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34693386	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34745455	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34759782	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34865316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34870159	0.92[EUR][1000 genomes]
rs34897745	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34920132	0.92[EUR][1000 genomes]
rs34985947	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34996127	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35111399	0.97[EUR][1000 genomes]
rs35178150	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35195804	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288652	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35335084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35354367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35429781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35431271	1.00[ASN][1000 genomes]
rs35434266	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35481399	1.00[ASN][1000 genomes]
rs35560301	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35566550	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35587265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35613615	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35614049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35617677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35678191	1.00[ASN][1000 genomes]
rs35685805	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35754688	0.92[EUR][1000 genomes]
rs35775079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35853141	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35919278	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35942803	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35960950	0.91[EUR][1000 genomes]
rs35984988	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36000011	1.00[ASN][1000 genomes]
rs36010446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36048333	1.00[AFR][1000 genomes]
rs36189995	0.92[EUR][1000 genomes]
rs3774630	0.95[EUR][1000 genomes]
rs41432345	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41537946	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57115330	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6765904	0.93[EUR][1000 genomes]
rs6775046	1.00[ASN][1000 genomes]
rs71327035	0.91[EUR][1000 genomes]
rs71327036	0.91[EUR][1000 genomes]
rs71327038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71327039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327040	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71327041	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71327042	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs71327043	1.00[ASN][1000 genomes]
rs71327044	1.00[ASN][1000 genomes]
rs71615441	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7620586	1.00[ASN][1000 genomes]
rs7624155	1.00[ASN][1000 genomes]
rs7628489	1.00[ASN][1000 genomes]
rs7631551	0.91[EUR][1000 genomes]
rs7651539	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46245600-46251800	Weak transcription	Spleen	Spleen
2	chr3:46247000-46251800	Enhancers	Primary B cells from peripheral blood	blood
3	chr3:46247200-46250200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr3:46247200-46250600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr3:46248200-46250200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:46248200-46250400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:46248200-46256400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:46248400-46256400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:46248600-46250200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:46248600-46251000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:46248800-46250200	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr3:46249000-46250200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:46249200-46250200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:46249400-46250200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr3:46249400-46250200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr3:46249400-46250200	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:46249400-46250400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:46249400-46250400	Enhancers	Colonic Mucosa	Colon
19	chr3:46249400-46250400	Enhancers	Dnd41	blood
20	chr3:46249400-46250600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr3:46249400-46250800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:46249400-46251200	Enhancers	Primary T cells from cord blood	blood
23	chr3:46249600-46250200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:46249600-46250200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:46249600-46250200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:46249600-46250200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:46249600-46250200	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr3:46249600-46250200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr3:46249600-46250200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:46249600-46250200	Enhancers	Stomach Mucosa	stomach
31	chr3:46249600-46250400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:46249600-46250400	Weak transcription	Brain Substantia Nigra	brain
33	chr3:46249600-46250400	Enhancers	Thymus	Thymus
34	chr3:46249600-46250600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:46249600-46251000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr3:46249600-46251200	Enhancers	NHLF	lung
37	chr3:46249600-46251400	Enhancers	HMEC	breast
38	chr3:46249600-46251800	Enhancers	Osteobl	bone
39	chr3:46249800-46250200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr3:46249800-46250200	Enhancers	Brain Angular Gyrus	brain
41	chr3:46249800-46250200	Enhancers	Fetal Muscle Trunk	muscle
42	chr3:46249800-46250400	Weak transcription	Placenta	Placenta
43	chr3:46249800-46250600	Enhancers	Adipose Nuclei	Adipose
44	chr3:46249800-46251000	Weak transcription	NHDF-Ad	bronchial
45	chr3:46249800-46251200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:46249800-46252200	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr3:46249800-46255800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr3:46250000-46250200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr3:46250000-46250200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:46250000-46250200	Enhancers	Rectal Mucosa Donor 29	rectum

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