Variant report

Variant	rs36048333
Chromosome Location	chr3:46280618-46280619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr3:46280548-46281301	MCF10A-Er-Src	breast:	n/a	chr3:46280920-46280930

Variant related genes	Relation type
CCR3	TF binding region

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10510750	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575062	0.85[EUR][1000 genomes]
rs11919884	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13060713	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13060802	1.00[AFR][1000 genomes]
rs13065351	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13067058	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13068145	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13068271	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13069467	1.00[AFR][1000 genomes]
rs13069750	1.00[AFR][1000 genomes]
rs13069845	1.00[AFR][1000 genomes]
rs13070099	1.00[AFR][1000 genomes]
rs13071469	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13073976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075836	1.00[AFR][1000 genomes]
rs13077302	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13078564	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13080757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080979	1.00[AFR][1000 genomes]
rs13083881	1.00[AFR][1000 genomes]
rs13093063	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13095940	1.00[AFR][1000 genomes]
rs13095946	1.00[AFR][1000 genomes]
rs13096307	1.00[AFR][1000 genomes]
rs13096325	1.00[AFR][1000 genomes]
rs13096371	1.00[AFR][1000 genomes]
rs13096808	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13096873	1.00[AFR][1000 genomes]
rs13096905	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13097340	1.00[AFR][1000 genomes]
rs13097666	1.00[AFR][1000 genomes]
rs13098911	1.00[AFR][1000 genomes]
rs13100243	0.88[EUR][1000 genomes]
rs1542756	0.81[EUR][1000 genomes]
rs17216717	1.00[AFR][1000 genomes]
rs17217831	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17282797	1.00[AFR][1000 genomes]
rs17282922	1.00[AFR][1000 genomes]
rs17283712	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17284138	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17284187	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1894387	0.85[EUR][1000 genomes]
rs1894388	0.85[EUR][1000 genomes]
rs2131092	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs28677778	0.88[EUR][1000 genomes]
rs3091310	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3091314	1.00[AFR][1000 genomes]
rs3092957	0.85[EUR][1000 genomes]
rs3092958	0.85[EUR][1000 genomes]
rs3092959	0.85[EUR][1000 genomes]
rs3176826	1.00[AFR][1000 genomes]
rs3181076	1.00[AFR][1000 genomes]
rs3181078	1.00[AFR][1000 genomes]
rs3181080	1.00[AFR][1000 genomes]
rs33998492	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34005848	0.81[EUR][1000 genomes]
rs34024447	0.85[EUR][1000 genomes]
rs34041956	0.85[EUR][1000 genomes]
rs34047458	1.00[AFR][1000 genomes]
rs34073838	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34079287	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34101673	1.00[AFR][1000 genomes]
rs34106161	0.85[EUR][1000 genomes]
rs34134191	1.00[AFR][1000 genomes]
rs34180919	0.88[EUR][1000 genomes]
rs34194160	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34272024	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34280313	1.00[AFR][1000 genomes]
rs34289272	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34340501	1.00[AFR][1000 genomes]
rs34351442	0.88[EUR][1000 genomes]
rs34363105	0.85[EUR][1000 genomes]
rs34378541	1.00[AFR][1000 genomes]
rs34406035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409248	1.00[AFR][1000 genomes]
rs34414382	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34423195	1.00[AFR][1000 genomes]
rs34448949	0.85[EUR][1000 genomes]
rs34473395	0.85[EUR][1000 genomes]
rs34523728	1.00[AFR][1000 genomes]
rs34531115	1.00[AFR][1000 genomes]
rs34558763	1.00[AFR][1000 genomes]
rs34567015	1.00[AFR][1000 genomes]
rs34570200	1.00[AFR][1000 genomes]
rs34578126	0.86[EUR][1000 genomes]
rs34625088	1.00[AFR][1000 genomes]
rs34677490	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34692251	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34693386	1.00[AFR][1000 genomes]
rs34709208	0.85[EUR][1000 genomes]
rs34745455	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34865316	1.00[AFR][1000 genomes]
rs34897745	1.00[AFR][1000 genomes]
rs34919616	1.00[AFR][1000 genomes]
rs34988015	0.88[EUR][1000 genomes]
rs34996127	1.00[AFR][1000 genomes]
rs35035328	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35117954	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35148665	0.88[EUR][1000 genomes]
rs35178150	1.00[AFR][1000 genomes]
rs35203745	0.88[EUR][1000 genomes]
rs35218998	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35288652	1.00[AFR][1000 genomes]
rs35335084	1.00[AFR][1000 genomes]
rs35354367	1.00[AFR][1000 genomes]
rs35367413	0.85[EUR][1000 genomes]
rs35373513	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35413141	0.85[EUR][1000 genomes]
rs35429781	1.00[AFR][1000 genomes]
rs35434266	1.00[AFR][1000 genomes]
rs35438577	0.85[EUR][1000 genomes]
rs35511592	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35513549	0.80[EUR][1000 genomes]
rs35560301	1.00[AFR][1000 genomes]
rs35566550	1.00[AFR][1000 genomes]
rs35577626	0.88[EUR][1000 genomes]
rs35587265	1.00[AFR][1000 genomes]
rs35601704	0.85[EUR][1000 genomes]
rs35613615	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35614049	1.00[AFR][1000 genomes]
rs35617677	1.00[AFR][1000 genomes]
rs35646896	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35685805	1.00[AFR][1000 genomes]
rs35775079	1.00[AFR][1000 genomes]
rs35853141	1.00[AFR][1000 genomes]
rs35919278	1.00[AFR][1000 genomes]
rs35942803	1.00[AFR][1000 genomes]
rs35943069	0.81[EUR][1000 genomes]
rs36010446	1.00[AFR][1000 genomes]
rs36052732	0.85[EUR][1000 genomes]
rs36078103	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3749461	0.85[EUR][1000 genomes]
rs3918354	0.85[EUR][1000 genomes]
rs3918362	0.85[EUR][1000 genomes]
rs3918365	0.85[EUR][1000 genomes]
rs3918368	0.85[EUR][1000 genomes]
rs4473594	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4987053	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6793370	0.88[EUR][1000 genomes]
rs71327038	1.00[AFR][1000 genomes]
rs71327039	1.00[AFR][1000 genomes]
rs71327040	1.00[AFR][1000 genomes]
rs71327041	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs71327042	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs71327047	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71327048	0.88[EUR][1000 genomes]
rs71327052	0.82[EUR][1000 genomes]
rs71327053	0.83[EUR][1000 genomes]
rs71327054	0.85[EUR][1000 genomes]
rs71327055	0.85[EUR][1000 genomes]
rs71327056	0.85[EUR][1000 genomes]
rs71327057	0.85[EUR][1000 genomes]
rs71615441	0.81[EUR][1000 genomes]
rs71615445	0.85[EUR][1000 genomes]
rs71622511	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7649905	0.88[EUR][1000 genomes]
rs9810242	0.88[EUR][1000 genomes]
rs9872023	0.90[EUR][1000 genomes]
rs9882616	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46278400-46282600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:46278400-46283600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:46278600-46281000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:46278600-46281800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:46278600-46282200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr3:46278600-46282800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:46280400-46281600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:46280600-46280800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:46280600-46281600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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